SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75277

Length: 173 nt

UniGene Fasta

>sp_v3.0_unigene75277
GGAGTTGTCGGATGCACTATGGAGCATCGTCCTCCCCCAGGGGAGGATAAAGAGCACCCTTTTAGCAACCCAGTTGGACCCCGTTCTCCTGAACTGTCCACTCTGGTGTATGAACGAATACTTGTATTCGTTGCAGAGAAGGATCTGCTGACAGATCGTGCTATTCTGTACTA

Ace file of the UniGene sp_v3.0_unigene75277

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Abhydrolase_3 domain containing protein	-	-	5.0e-05	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity	GO:0016787	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, GDXG, active site	IPR002168	-	0.0	-
Sma3	Alpha/beta hydrolase fold-3	IPR013094	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0Y8

Fln msg: Distance to subject end: 56 aas, your sequence is shorter than subject: 57 - 357

Fln protein: GVVGCTMEHRPPPGEDKEHPFSNPVGPRSPELSTLVYERILVFVAEKDLLTDRAILY

Protein Length: 58

Fln nts: GGAGTTGTCGGATGCACTATGGAGCATCGTCCTCCCCCAGGGGAGGATAAAGAGCACCCTTTTAGCAACCCAGTTGGACCCCGTTCTCCTGAACTGTCCACTCTGGTGTATGAACGAATACTTGTATTCGTTGCAGAGAAGGATCTGCTGACAGATCGTGCTATTCTGTACTA

Fln Alignment:

GFIJCBT03HI936___PPGEDKEHPFSNPVGPRSPELSTLVYERILVFVAEKDLLTDRAILY
A9P0Y8_______________PPGADKDHPFSNPVGPRSPALSTLEYGRILVFVAEKDLLRDRAVLY

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain