SustainPineDB

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Assembly info
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75258

Length: 241 nt

UniGene Fasta

>sp_v3.0_unigene75258
TCTTTCTCCTATTTTAGTAGACATCTATCGGAACCTTAGAGTCTACTAAAATAGGAGAAAGAAGTTTAAGCACATCCTCCTTTTTTTAGTAGACTCTAAGGTTCCGATAGATGTGATTGCCTTCACTGCTATATCTCTTGGATTGATCTATGTTGGATCTTGCAATGATGAAGTGGCTCAGTCAATTATTATTGCCTTGATGGAGAGAAGTGATTCNGAGCTAGGAGAGCCACTTACTCGA

Ace file of the UniGene sp_v3.0_unigene75258

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S proteasome regulatory subunit S2 1B [Arabidopsis thaliana] sp\|Q6XJG8.1\|RPN1B_ARATH RecName: Full=26S proteasome non-ATPase regulatory subunit 2 1B; AltName: Full=26S proteasome regulatory subunit RPN1 B; Short=AtRPN1b; AltName: Full=26S proteasome reg	-	-	5.0e-14	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	Putative 26S proteasome regulatory subunit S2	-	-	1.116e-08	-

Source	Gene names
Sma3	AT4g28470; At2g20580; At4g28470; F20O9.150; GSVIVT00018640001; OsI_24349; OsI_30901; OsJ_22525; P0468G03.16; PHYPADRAFT_154274; PHYPADRAFT_174095; POPTRDRAFT_827164; POPTRDRAFT_832187; RCOM_1172830; RPN1a; RPN1b;

Source	GOs	Term	Type	Identity
Sma3	proteasome complex	GO:0000502	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	enzyme regulator activity	GO:0030234	Molecular Function	-
Sma3	regulation of protein catabolic process	GO:0042176	Biological Process	-
Sma3	regulation of cell cycle	GO:0051726	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	0.0	-
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit	IPR016643	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G28470.1	RPN1B, ATRPN1B 26S proteasome regulatory subunit S2 1B chr4:14067082-14072357 REVERSE LENGTH=891	2.0e-18	73%
RefSeq	Arabidopsis thaliana	NP_194576.5	26S proteasome regulatory subunit S2 1B [Arabidopsis thaliana]	3.0e-18	73%
RefSeq	Populus trichocarpa	XP_002327906.1	predicted protein [Populus trichocarpa]	5.0e-17	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRR7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 334 aas, your sequence is shorter than subject: 80 - 892

Fln protein: LSPILVDIYRNLRVY*NRRKKFKHILLFLVDSKVPIDVIAFTAISLGLIYVGSCNDEVAQSIIIALMERSDSELGEPLTR

Protein Length: 81

Fln nts: TCTTTCTCCTATTTTAGTAGACATCTATCGGAACCTTAGAGTCTACTAAAATAGGAGAAAGAAGTTTAAGCACATCCTCCTTTTTTTAGTAGACTCTAAGGTTCCGATAGATGTGATTGCCTTCACTGCTATATCTCTTGGATTGATCTATGTTGGATCTTGCAATGATGAAGTGGCTCAGTCAATTATTATTGCCTTGATGGAGAGAAGTGATTCaGAGCTAGGAGAGCCACTTACTCGA

Fln Alignment:

GFIJCBT03FUOOH___LVDSKVPIDVIAFTAISLGLIYVGSCNDEVAQSIIIALMERSDSELGEPLTR
B8LRR7_______________LTDSKVPIDVIAFTAISLGLIYVGSCNDEVAQSIIIALMERSDSELGEPLTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain