SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene75066

Length: 343 nt

UniGene Fasta

>sp_v3.0_unigene75066
TGTGCACAGTATATGCTCGTGATATAGATCAGCATATCCGTGACGCAGAGCAGGTGAAGAGAAGGGCGGCAGCTAACTATATGGAAGAGGTCCAGGAAGATATAAATGCCAACATGCGAGGGATTCTAATTGACTGGCTTGTGGAGGTTGCTGAGGAATACAAACTTGTTCCAGATACATTGTATTTGACAGTCTCCTATATTGACCGGTACCTTTCCAACAATGTAGTAAATAGACAACGCTTGCAATTGCTGGGTGTCACCTGCATGTTAATTGCAGCTAAATATGAGGAGATATGTGCTCCCCAGGTTGAAGAATTCTGCTATATAACTGATAATACCTA

Ace file of the UniGene sp_v3.0_unigene75066

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cyclin A [Scutellaria baicalensis]	-	-	2.00386e-43	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Cyclin	-	-	4.043e-29	-

Source	Gene names
Sma3	AcCycB1; AcCycB2; At1g15570; At1g44110; At1g47210; At1g47220; At1g47230; At1g76310; At1g77390; At1g80370; At2g26760; At3g11520; At5g11300; At5g25380; At5g43080; B1085F09.20; CHLREDRAFT_147453; CHLREDRAFT_206115; CYC2; CYC3A; CYC3B; CYC3C; CYCA; CYCA1; CYC

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	GPI anchor biosynthetic process	GO:0006506	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	meiosis	GO:0007126	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	DNA endoreduplication	GO:0042023	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Mannosyltransferase, DXD	IPR007704	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin A/B/D/E	IPR014400	-	-
Sma3	Cyclin A, G2/mitotic-specific	IPR015453	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G44110.1	" CYCA1;1 Cyclin A1;1 chr1:16775035-16777182 REVERSE LENGTH=460"	70%
RefSeq	Arabidopsis thaliana	NP_175077.1	cyclin-A1-1 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002306649.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC16

Fln msg: Distance to subject end: 144 aas, your sequence is shorter than subject: 113 - 465

Fln protein: CTVYARDIDQHIRDAEQVKRRAAANYMEEVQEDINANMRGILIDWLVEVAEEYKLVPDTLYLTVSYIDRYLSNNVVNRQRLQLLGVTCMLIAAKYEEICAPQVEEFCYITDNT

Protein Length: 114

Fln nts: TGTGCACAGTATATGCTCGTGATATAGATCAGCATATCCGTGACGCAGAGCAGGTGAAGAGAAGGGCGGCAGCTAACTATATGGAAGAGGTCCAGGAAGATATAAATGCCAACATGCGAGGGATTCTAATTGACTGGCTTGTGGAGGTTGCTGAGGAATACAAACTTGTTCCAGATACATTGTATTTGACAGTCTCCTATATTGACCGGTACCTTTCCAACAATGTAGTAAATAGACAACGCTTGCAATTGCTGGGTGTCACCTGCATGTTAATTGCAGCTAAATATGAGGAGATATGTGCTCCCCAGGTTGAAGAATTCTGCTATATAACTGATAATACCTA

Fln Alignment:

GFIJCBT03F4UE2___YARDIDQHIRDAEQVKRRAAANYMEEVQEDINANMRGILIDWLVEVAEEYKLVPDTLYLTVSYIDRYLSNNVVNRQRLQLLGVTCMLIAAKYEEICAPQVEEFCYITDN
D5AC16_______________YVEGIYKFYRRTEHMS--CVPDYMPR-QRDINGKMRAILINWLIEVHYRFGLMPETLYLTINLLDRYLSIQRVSRNNFQLVGTTAMLLASKYEEIWAPKVDEFLDILEN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain