SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74927

Length: 325 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene74927
CATGAAGACTTGTGGAGGAGATTCTTCAAGAACTTGAAACTCATCGCGGTGGATGAATTGCATTATTATACGGGTCTTCTTGGGAGCCATGTTGCACAGGTAATGCGCCGATTGCGACGGATATGCGCGGCGATTGGAAACAGAAGAGTGCAATTCGTGTCGTGTAGTGCGACCATCGCGAATCCATTGGAACACATGCGAAATATCTTTGGCGTTGAGAACGTCACGGCTGTTACGGAGGACGGAGCACCCTCTGGGCACAAGGAATTCCTAGTGTGGAATCCTCCATTGAAAGCGACCAAGGTAGAATACAATTACGTTAGGG

Ace file of the UniGene sp_v3.0_unigene74927 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEAD/DEAH box helicase, putative n=2 Tax=Metarhizium RepID=E9EFH5_METAQ	-	-	5.0e-34	67%
FL-Next	tr=Predicted protein; Ostreococcus lucimarinus (strain CCE9901).	-	-	0.0	49%

Source	Gene names
Sma3	OSTLU_40984;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	DNA recombination	GO:0006310	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA helicase, ATP-dependent, RecQ type	IPR004589	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A4RYF7

Fln msg: Distance to subject end: 521 aas, your sequence is shorter than subject: 108 - 815

Fln protein: HEDLWRRFFKNLKLIAVDELHYYTGLLGSHVAQVMRRLRRICAAIGNRRVQFVSCSATIANPLEHMRNIFGVENVTAVTEDGAPSGHKEFLVWNPPLKATKVEYNYVR

Protein Length: 109

Fln nts: CATGAAGACTTGTGGAGGAGATTCTTCAAGAACTTGAAACTCATCGCGGTGGATGAATTGCATTATTATACGGGTCTTCTTGGGAGCCATGTTGCACAGGTAATGCGCCGATTGCGACGGATATGCGCGGCGATTGGAAACAGAAGAGTGCAATTCGTGTCGTGTAGTGCGACCATCGCGAATCCATTGGAACACATGCGAAATATCTTTGGCGTTGAGAACGTCACGGCTGTTACGGAGGACGGAGCACCCTCTGGGCACAAGGAATTCCTAGTGTGGAATCCTCCATTGAAAGCGACCAAGGTAGAATACAATTACGTTAGGG

Fln Alignment:

GFIJCBT03GSP3E___WRRFFKNLKLIAVDELHYYTGLLGSHVAQVMRRLRRICAAIGNRRVQFVSCSATIANPLEHMRNIFGVENV-------TAVTEDGAPSGHKEFLVWNPPLK
A4RYF7_______________WARVLSGLRYVVVDEAHAYSGVFGSHVALIIRRLRRLCSELYGSSPQFIISSATVANPLEHARDLIGYDGVHPERDVIEAVTNDGAPRGVKTFLLWNPMLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain