SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74609

Length: 457 nt

UniGene Fasta

>sp_v3.0_unigene74609
GCACCCTTCATTTCATCGCAAGTTCGAGAATGCTACGCATACTACCTGTTGCACCATTTGTGCGAGCTGACGGGTGCAGAAGCACTAGTCAAGCGGAAGGCTCAGCCGCAAGTGAACAATCGACGGGGGCAGCGCGGTCGAAAAGCAGAGAGCGATGCTGAGGATGATGATACACCTGAACTACCTCAAACCATCTTATTTGTCTCGCGTTGCCGGACGGCAGCGCATCTTTCCCTCATGCTGAACGAGCTCGACATACCAAATACACCTCTGCATTCTCACCTCAGTCAACGTGAACGTCTAGCATCGTTAAACGATTTCAGAGCTTCCCGAAAACCTCTTCTCATCGCTACCGACGTTGGAAGTCGTGGTCTTGATATTCCAGAAGTCGAAGTGGTCATCAACTGGGATGTGCCTCGTGATCCGGCAGACTACGTGCATCGAGTCGGTCGTACAG

Ace file of the UniGene sp_v3.0_unigene74609

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase DBP8 n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=DBP8_CRYNB	-	-	2.0e-35	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%

Source	Gene names
Sma3	At1g16280; CHLREDRAFT_128577; F3O9.8; GSVIVT00002064001; LOC_Os07g43980; Os07g0633500; OsI_26993; Ot12g00610; P0455H11.103; P0519E12.133; PHATRDRAFT_9893; PHYPADRAFT_220567; POPTRDRAFT_872878; RCOM_1574630; RH36; THAPSDRAFT_34221; VITISV_021046;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G16280.1	RH36, AtRH36, SWA3 RNA helicase 36 chr1:5568482-5570487 REVERSE LENGTH=491	3.0e-30	60%
RefSeq	Arabidopsis thaliana	NP_173078.1	DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana]	3.0e-30	60%
RefSeq	Populus trichocarpa	XP_002311293.1	predicted protein [Populus trichocarpa]	2.0e-25	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9C0

Fln msg: Distance to subject end: 48 aas, your sequence is shorter than subject: 152 - 427

Fln protein: APFISSQVRECYAYYLLHHLCELTGAEALVKRKAQPQVNNRRGQRGRKAESDAEDDDTPELPQTILFVSRCRTAAHLSLMLNELDIPNTPLHSHLSQRERLASLNDFRASRKPLLIATDVGSRGLDIPEVEVVINWDVPRDPADYVHRVGRT

Protein Length: 153

Fln nts: GCACCCTTCATTTCATCGCAAGTTCGAGAATGCTACGCATACTACCTGTTGCACCATTTGTGCGAGCTGACGGGTGCAGAAGCACTAGTCAAGCGGAAGGCTCAGCCGCAAGTGAACAATCGACGGGGGCAGCGCGGTCGAAAAGCAGAGAGCGATGCTGAGGATGATGATACACCTGAACTACCTCAAACCATCTTATTTGTCTCGCGTTGCCGGACGGCAGCGCATCTTTCCCTCATGCTGAACGAGCTCGACATACCAAATACACCTCTGCATTCTCACCTCAGTCAACGTGAACGTCTAGCATCGTTAAACGATTTCAGAGCTTCCCGAAAACCTCTTCTCATCGCTACCGACGTTGGAAGTCGTGGTCTTGATATTCCAGAAGTCGAAGTGGTCATCAACTGGGATGTGCCTCGTGATCCGGCAGACTACGTGCATCGAGTCGGTCGTACAG

Fln Alignment:

GFIJCBT03F4HRE___DTPELPQTILFVSRCRTAAHLSLMLNELDIPNTPLHSHLSQRERLASLNDFRASRKPLLIATDVGSRGLDIPEVEVVINWDVPRDPADYVHRVGR
D5A9C0_______________DALDFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain