SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74551

Length: 378 nt

UniGene Fasta

>sp_v3.0_unigene74551
ATGAAGCCAGACTACATCACCTTTGTTGGTGTGTTGTCTGCATGCAGTCATGCAGGTCTACTAGATGAGGGCTGGCGATATTTTGATTACATGAGGCGAGATCACTGCATTCCAGCCAGAGTGGAGCATTATACTTGTATGGTTCACCTTCTCGGTCGTACTGGGCATCTAGAGGAAGCACACAGCTTGATCAAGAACATGCCTTTGGAACCTGATGCGGGTGTGTTGGGAGCCTTGCTCTTTGCATGTTGGGTTCACGTTAATGTGGATCTGGGAGAACGTGTATCAGAATGGCTTCTTGAGTTAGAGCCAGATAATGCTGGAAATTATGTAATGCTCTCAAACATCTATGCCGCTGCTGGACAGTGGAATGATGTC

Ace file of the UniGene sp_v3.0_unigene74551

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Tetratricopeptide-like helical	-	-	1.808e-14	-

Source	Gene names
Sma3	At1g06140; At1g08070; At1g20230; At2g01510; At2g13600; At2g20540; At2g22070; At3g13770; At3g46790; At4g02750; At4g16835; At4g18750; At4g19191; At4g33990; At5g39350; At5g40410; At5g44230; B1032F05.19; CRR2; DYW10; EMB2758; F17I5.180; F28A21.160; F2I9.13; F

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	chloroplast RNA processing	GO:0031425	Biological Process	-
Sma3	polycistronic mRNA processing	GO:0031426	Biological Process	-
Sma3	methylation	GO:0032259	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	Putative methylase	IPR004557	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20230.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:7009570-7011852 FORWARD LENGTH=760	4.06377e-44	57%
RefSeq	Arabidopsis thaliana	NP_173449.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	5.04467e-44	57%
RefSeq	Populus trichocarpa	XP_002301973.1	predicted protein [Populus trichocarpa]	1.4013e-45	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 150 aas, your sequence is shorter than subject: 126 - 312

Fln protein: MKPDYITFVGVLSACSHAGLLDEGWRYFDYMRRDHCIPARVEHYTCMVHLLGRTGHLEEAHSLIKNMPLEPDAGVLGALLFACWVHVNVDLGERVSEWLLELEPDNAGNYVMLSNIYAAAGQWNDV

Protein Length: 127

Fln nts: ATGAAGCCAGACTACATCACCTTTGTTGGTGTGTTGTCTGCATGCAGTCATGCAGGTCTACTAGATGAGGGCTGGCGATATTTTGATTACATGAGGCGAGATCACTGCATTCCAGCCAGAGTGGAGCATTATACTTGTATGGTTCACCTTCTCGGTCGTACTGGGCATCTAGAGGAAGCACACAGCTTGATCAAGAACATGCCTTTGGAACCTGATGCGGGTGTGTTGGGAGCCTTGCTCTTTGCATGTTGGGTTCACGTTAATGTGGATCTGGGAGAACGTGTATCAGAATGGCTTCTTGAGTTAGAGCCAGATAATGCTGGAAATTATGTAATGCTCTCAAACATCTATGCCGCTGCTGGACAGTGGAATGATGTC

Fln Alignment:

GFIJCBT03GF4KQ___MKPDYITFVGVLSACSHAGLLDEGWRYFDYMRRDHCIPARVEHYTCMVHLLGRTGHLEEAHSLIKNMPLEPDAGVLGALLFACWVHVNVDLGERVSEWLLELEPDNAGNYVMLSNIYAAAGQWNDV
D5ADG9_______________VKPNEITFISVLSACSHAGLVDEGWKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain