SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74470

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene74470
ATAGTTCGATGAACACGTCACATTTTCTCACGGTAGAAACCAACATGGGAGAATTGAAGGAAAGCGACACTTACCAGGAAGAACTCCTTGACTATGAAGAAGAAGATGTTGCAACTGATTTGGTTGGTAGAGGAATCGATATTGAGCGTGTAAATATTGTTGTTAACTATGACATGCCAGATTCTGCGGATACTTACTTGCACAGA

Ace file of the UniGene sp_v3.0_unigene74470

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 56 n=2 Tax=Arabidopsis thaliana RepID=F4JWF6_ARATH	-	-	8.0e-11	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%

Source	Gene names
Sma3	CHLREDRAFT_83282; GSVIVT00000354001; GSVIVT00032637001; MICPUCDRAFT_29880; MICPUN_109373; OSTLU_89708; Ot14g01480; PHATRDRAFT_51301; PHYPADRAFT_188774; PHYPADRAFT_96766; POPTRDRAFT_578196; POPTRDRAFT_819597; RCOM_2033650; UAP56; helicase_5;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G11170.1	DEAD/DEAH box RNA helicase family protein chr5:3553334-3556646 FORWARD LENGTH=427	2.0e-15	96%
RefSeq	Arabidopsis thaliana	NP_850807.2	DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]	2.0e-15	96%
RefSeq	Populus trichocarpa	XP_002309623.1	predicted protein [Populus trichocarpa]	3.0e-15	96%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9C0

Fln msg: Distance to subject end: 52 aas, your sequence is shorter than subject: 68 - 427

Fln protein: SSMNTSHFLTVETNMGELKESDTYQEELLDYEEEDVATDLVGRGIDIERVNIVVNYDMPDSADTYLHR

Protein Length: 69

Fln nts: ATAGTTCGATGAACACGTCACATTTTCTCACGGTAGAAACCAACATGGGAGAATTGAAGGAAAGCGACACTTACCAGGAAGAACTCCTTGACTATGAAGAAGAAGATGTTGCAACTGATTTGGTTGGTAGAGGAATCGATATTGAGCGTGTAAATATTGTTGTTAACTATGACATGCCAGATTCTGCGGATACTTACTTGCACAGA

Fln Alignment:

GFIJCBT03FPH4S___VATDLVGRGIDIERVNIVVNYDMPDSADTYLHR
D5A9C0_______________VATDLVGRGIDIERVNIVVNYDMPDSADTYLHR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain