SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74408

Length: 261 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene74408
ACTCACTCACAACGATAACATCAAGGAGAAGATCGCTGACATTAGCTCTACCGTCAAGTTCCAATTGAAGAAGGTTTTGTGCTTGGGTGTCGCCGTCGGTCACGTCAAGATGACTCCCGAAGAGTTGAGAACTAACCTCAACTTGTCCATCAACTTCTTGATCTCTTTGTTGAAGAAGGGCTGGCAAAACGTTCGTTCTCTCCACATTAAGAGCACTATGGGCAAGGTCCAACGCGTCTACTAAGCTGTTTGTGGAAGAAC

Ace file of the UniGene sp_v3.0_unigene74408 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to L10a n=1 Tax=Hydra magnipapillata RepID=UPI0001927716	-	-	4.0e-19	58%
FL-Next	sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Ribosomal protein L1	-	-	2.573e-36	-

Source	Gene names
Sma3	At1g08360; At2g27530; At5g22440; CHLREDRAFT_195585; F10A12.22; F15K20.37; GSVIVT00021612001; MICPUCDRAFT_49658; MICPUN_95416; MWD9.24; OJ1150_A11.31; OSJNBa0073A18.28; OSTLU_45590; Os01g0860300; Os02g0321900; OsI_04513; OsI_06983; OsI_30253; OsI_30261; Os

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Ribosomal protein L1	IPR002143	-	-
Sma3	Glutaredoxin active site	IPR011767	-	-
Sma3	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	-
Sma3	Ribosomal protein L1, 3-layer alpha/beta-sandwich	IPR016095	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G27530.1	PGY1 Ribosomal protein L1p/L10e family chr2:11763443-11764570 REVERSE LENGTH=216	4.0e-18	53%
RefSeq	Arabidopsis thaliana	NP_850104.1	60S ribosomal protein L10a-2 [Arabidopsis thaliana]	5.0e-18	53%
RefSeq	Populus trichocarpa	XP_002310766.1	predicted protein [Populus trichocarpa]	3.0e-19	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNV9

Fln msg: your sequence is shorter than subject: 81 - 216

Fln protein: LTHNDNIKEKIADISSTVKFQLKKVLCLGVAVGHVKMTPEELRTNLNLSINFLISLLKKGWQNVRSLHIKSTMGKVQRVY*

Protein Length: 82

Fln nts: ACTCACTCACAACGATAACATCAAGGAGAAGATCGCTGACATTAGCTCTACCGTCAAGTTCCAATTGAAGAAGGTTTTGTGCTTGGGTGTCGCCGTCGGTCACGTCAAGATGACTCCCGAAGAGTTGAGAACTAACCTCAACTTGTCCATCAACTTCTTGATCTCTTTGTTGAAGAAGGGCTGGCAAAACGTTCGTTCTCTCCACATTAAGAGCACTATGGGCAAGGTCCAACGCGTCTACTAA___GCTGTTTGTGGAAGAAC

Fln Alignment:

GFIJCBT03FNQ6T___LTHNDNIKEKIADISSTVKFQLKKVLCLGVAVGHVKMTPEELRTXXXXXXXXXXXXLKKGWQNVRSLHIKSTMGKVQRVY
A9NNV9_______________VSHQESLESKVNETKATVKFQLKKVLCMGVAVGNCGMEEKQVFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKPARVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain