SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74131

Length: 372 nt

UniGene Fasta

>sp_v3.0_unigene74131
AGATTAAAGATGATAAGGTGGAAACCAGTACTTCGAAGGTTGTTTATTGTTGATTTTGTTGACTAGGCTTAGATATGAGGGCCATGGAGAACACATAAAACATGTCACTGTATTTAACCATAAACTGACTTAGAGCTAAATATCGTATTGAGTCTATTGACTAATGTTTCACATTCAGCAATTCCCCTTGTATTGAAAAGTAAGACATCTTTGCAGGAAATGGAAGCTACTGTAGTGGATGGAAATGGTACAGAGACGGGCCATATCATAGTCACCACCATTGGTGGCAGGAATGGTCAACCTAAGCAAACCATAAGTTACATGGCAGAACGTGTGGTAGGAACTGGATCTTTTGGAATTGTCTTTCAGGCC

Ace file of the UniGene sp_v3.0_unigene74131

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	shaggy-like kinase alpha [Arabidopsis thaliana]	-	-	2.0e-21	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Glycogen synthase kinase-3 beta, putative	-	-	6.901e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	2.573e-19	-
Sma3	[Tau protein] kinase.	EC:2.7.11.26	-	4.592e-11	-

Source	Gene names
Sma3	ASK1; ASK3; ASK5; ASK6; ASK7; ASK8; ASK9; AT1G06390; AT3G05840; AT4G18710; At1g06390; At2g30980; At3g05840; At4g00720; At4g18710; At5g14640; At5g26751; BIN2; DWF12; F10A16.14; F28A21.120; F2P16.21; F6N23.11; F7F1.19; GSK1; GSVIVT00018774001; GSVIVT0002071

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	meristem structural organization	GO:0009933	Biological Process	-
Sma3	regulation of protein localization	GO:0032880	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G26751.1	ATSK11, SK 11 shaggy-related kinase 11 chr5:9399582-9401839 REVERSE LENGTH=405	4.0e-27	94%
RefSeq	Arabidopsis thaliana	NP_568486.1	Shaggy-related protein kinase alpha [Arabidopsis thaliana]	6.0e-27	94%
RefSeq	Populus trichocarpa	XP_002330056.1	predicted protein [Populus trichocarpa]	6.0e-27	94%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUP4

Fln msg: Distance to subject end: 319 aas, your sequence is shorter than subject: 51 - 370

Fln protein: MEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGTGSFGIVFQA

Protein Length: 52

Fln nts: AGATTAAAGATGATAAGGTGGAAACCAGTACTTCGAAGGTTGTTTATTGTTGATTTTGTTGACTAGGCTTAGATATGAGGGCCATGGAGAACACATAAAACATGTCACTGTATTTAACCATAAACTGACTTAGAGCTAAATATCGTATTGAGTCTATTGACTAATGTTTCACATTCAGCAATTCCCCTTGTATTGAAAAGTAAGACATCTTTGCAGGAA_-_ATGGAAGCTACTGTAGTGGATGGAAATGGTACAGAGACGGGCCATATCATAGTCACCACCATTGGTGGCAGGAATGGTCAACCTAAGCAAACCATAAGTTACATGGCAGAACGTGTGGTAGGAACTGGATCTTTTGGAATTGTCTTTCAGGCC

Fln Alignment:

GFIJCBT03HJR1T___MEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGTGSFGIVFQA
A9NUP4_______________MEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGTGSFGIVFQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain