SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74061

Length: 221 nt

UniGene Fasta

>sp_v3.0_unigene74061
TGATGCTGTAACTCAGCTGGAGGGCCAGATAAGGCCACTCCTAAGTCAGTAGTTGAGAGTTATGGGCGTTAAGGGTCTAACACTGTACCATTTGAAAAGTCATCTCCAGAAATACAGGCTTGGCAAGCAGTCTTGCAAGGAAAGCAACTCGGACACAAATAAAGATGGGGTCAGCTCAGTTTGCAGTAAGGACCAAAACATCAAAAGCCGAGACAGCAACA

Ace file of the UniGene sp_v3.0_unigene74061

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	unfertilized embryo sac 16 protein / transcription factor [Arabidopsis thaliana] gb\|AAM65307.1\| transfactor, putative [Arabidopsis thaliana] dbj\|BAE98586.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE83307.1\| unfertilized embryo sac 16 protein / tr	-	-	1.0e-11	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Myb family transcription factor-related protein	-	-	1.606e-18	-

Source	Gene names
Sma3	APL; AT1G79430; At1g79430; At4g13640; B0403H10-OSIGBa0105A11.2; GSVIVT00002102001; GSVIVT00011845001; GSVIVT00023376001; GSVIVT00031697001; GSVIVT00037529001; OSJNBa0073A21.20; OSJNBa0083N12.9; Os02g0174000; Os04g0600000; Os06g0609500; Os06g0664800; Os08g

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G13640.2	-	1.0e-16	56%
RefSeq	Arabidopsis thaliana	NP_567408.1	unfertilized embryo sac 16 protein / transcription factor [Arabidopsis thaliana]	2.0e-16	56%
RefSeq	Populus trichocarpa	XP_002323774.1	predicted protein, partial [Populus trichocarpa]	1.0e-18	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPV3

Fln msg: Distance to subject end: 254 aas, your sequence is shorter than subject: 73 - 392

Fln protein: DAVTQLEGQIRPLLSQ*LRVMGVKGLTLYHLKSHLQKYRLGKQSCKESNSDTNKDGVSSVCSKDQNIKSRDSN

Protein Length: 74

Fln nts: TGATGCTGTAACTCAGCTGGAGGGCCAGATAAGGCCACTCCTAAGTCAGTAGTTGAGAGTTATGGGCGTTAAGGGTCTAACACTGTACCATTTGAAAAGTCATCTCCAGAAATACAGGCTTGGCAAGCAGTCTTGCAAGGAAAGCAACTCGGACACAAATAAAGATGGGGTCAGCTCAGTTTGCAGTAAGGACCAAAACATCAAAAGCCGAGACAGCAACA

Fln Alignment:

GFIJCBT03GVVVI___DAVTQLEGQIRPLLSQ*LRVMGVKGLTLYHLKSHLQKYRLGKQSCKESNSDTNKDGV-------SSVCSKDQNI
C0PPV3_______________DAVTQLGGPDKATPKTIMRAMGVKGLTLYHLKSHLQKYRLGKQPFKEFSDQSNKDASCLTEGQGASTCSSSKMI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain