SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene74009

Length: 447 nt

UniGene Fasta

>sp_v3.0_unigene74009
AAATCTGGTTTATCACAATCTGTTTGATGCAATGGTGGACGCCCTAATTTCAGCCATGGAAGCCATGGGCCAACCTAACATTCCCATCGTTATCACTGAAAGTGGTTGGCCATCTAGCGGTAACAATGTTGCGACAGTAAGCAATGCACGGATTTACAATAACAATTTCATCCAACATGTGCTGTCTGCAACAGGAACGCCCAAGAGGCCAGGCAAAAGCATTGAGTCATTCGTCTTCACCATGTTTAACGAAGATCAAAAAGCCTGGAGATATTACAGAGCAAAATTTCGGACTGTTTTACCCCGACACGAAGCTCCCAATATATCCCGTTCAATTCAAATAAAACAAGGGCAACTGGCGTTGCAGTAGTGCCTGCCACGACAGGTAGGCCAAAGATTTAGAAAAACTCTATTTACAGGTTTTGAATATCTTCTAGCACATGATTC

Ace file of the UniGene sp_v3.0_unigene74009

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyl hydrolase-like protein (Fragment) n=2 Tax=Picea sitchensis RepID=E0ZJQ1_PICSI	-	-	1.0e-29	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Beta-1,3-glucanase	-	-	2.522e-35	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	1; 3 beta gluc; At1g66250; At2g01630; At3g57270; At5g20330; At5g20340; At5g20390; BGLUC; BHVG1; F28O9.120; GSVIVT00012119001; GSVIVT00015734001; GSVIVT00025337001; GSVIVT00025339001; GSVIVT00025340001; GSVIVT00025341001; GSVIVT00025342001; GSVIVT000253460

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	glucan exo-1,3-beta-glucosidase activity	GO:0004338	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	licheninase activity	GO:0042972	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Aliphatic acid kinase, short-chain	IPR000890	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57270.1	BG1 beta-1,3-glucanase 1 chr3:21191336-21193118 REVERSE LENGTH=340	1.0e-26	51%
RefSeq	Arabidopsis thaliana	NP_191286.1	beta-1,3-glucanase 1 [Arabidopsis thaliana]	2.0e-26	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AD06

Fln msg: your sequence is shorter than subject: 123 - 230

Fln protein: NLVYHNLFDAMVDALISAMEAMGQPNIPIVITESGWPSSGNNVATVSNARIYNNNFIQHVLSATGTPKRPGKSIESFVFTMFNEDQKAWRYYRAKFRTVLPRHEAPNISRSIQIKQGQLALQ*

Protein Length: 124

Fln nts: AAATCTGGTTTATCACAATCTGTTTGATGCAATGGTGGACGCCCTAATTTCAGCCATGGAAGCCATGGGCCAACCTAACATTCCCATCGTTATCACTGAAAGTGGTTGGCCATCTAGCGGTAACAATGTTGCGACAGTAAGCAATGCACGGATTTACAATAACAATTTCATCCAACATGTGCTGTCTGCAACAGGAACGCCCAAGAGGCCAGGCAAAAGCATTGAGTCATTCGTCTTCACCATGTTTAACGAAGATCAAAAAGCCTGGAGATATTACAGAGCAAAATTTCGGACTGTTTTACCCCGACACGAAGCTCCCAATATATCCCGTTCAATTCAAATAAAACAAGGGCAACTGGCGTTGCAGTAG___TGCCTGCCACGACAGGTAGGCCAAAGATTTAGAAAAACTCTATTTACAGGTTTTGAATATCTTCTAGCACATGATTC

Fln Alignment:

GFIJCBT03FWVYC___YHNLFDAMVDALISAMEAMGQPNIPIVITESGWPSSGNNVATVSNARIYNNNFIQHVLSATGTPKRPGKSIESFVFTMFNEDQKAWRYYRAKFRTVLPRHEA
D5AD06_______________YNNLFDALVDTFLSAIEALGYPNIPLIVTESGWPSGGEDVATVDNARAYNNNLIRHVLSNAGTPKRPGTSIETYIFSLFNEDKKTGAETERHFGLFYPNQQS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain