SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73923

Length: 419 nt

UniGene Fasta

>sp_v3.0_unigene73923
TTTCTCTGAGGTGCAGAAATTTTGGGCCCTCAGGTCTCCATGTGCACCCACAGAGAGGGGTTACTCAGGGGTACAGCTGCAGGGAGAGGAAGGAGAAGCGCTACAAATCTATACTTCTGCTGGAAGCTGCTTCTCCTTCATTGCTCAACGTGATACACCGCTTTCAGTTGAAGGAGGGATACAGAACGGTGTATGTGAAGGCCTCCAAGGCAGTGATCAATCACTATAAGTATCAGGTTTGGAGTGAGTTCAAGGCCAAGTTTCGGAGGAGAGTGTCTGCCTACGTTGTCGACTGGAAAGAGTCTACCAATGCTGTGTCCCAAGATCGAGCTCCGGGTGTAGGCAGCAGGGCCATCAAGCCCCATGGATGGGAGAATATGTTCTGCCAAGTGCATGATAGTGCGTTGCAGGAGTTTGCA

Ace file of the UniGene sp_v3.0_unigene73923

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF23 domain containing protein	-	-	3.0e-07	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	Gene names
Sma3	AT4g37420; At1g27200; At4g37420; At5g40720; B1203H11.32-1; B1203H11.32-2; F6G17.70; GSVIVT00002888001; GSVIVT00020580001; GSVIVT00028930001; OSJNBa0073J19.9-1; OSJNBa0073J19.9-2; OSJNBa0091F23.17-1; OSJNBa0091F23.17-2; Os06g0727900; Os08g0121900; OsI_0379

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Domain of unknown function DUF23	IPR008166	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G27200.1	Domain of unknown function (DUF23) chr1:9449812-9451539 REVERSE LENGTH=575	2.8026e-45	53%
RefSeq	Arabidopsis thaliana	NP_564272.1	uncharacterized protein [Arabidopsis thaliana]	4.2039e-45	53%
RefSeq	Populus trichocarpa	XP_002306978.1	predicted protein, partial [Populus trichocarpa]	0.0	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLQ9

Fln msg: Distance to subject end: 18 aas, your sequence is shorter than subject: 139 - 595

Fln protein: SLRCRNFGPSGLHVHPQRGVTQGYSCRERKEKRYKSILLLEAASPSLLNVIHRFQLKEGYRTVYVKASKAVINHYKYQVWSEFKAKFRRRVSAYVVDWKESTNAVSQDRAPGVGSRAIKPHGWENMFCQVHDSALQEFA

Protein Length: 140

Fln nts: TTTCTCTGAGGTGCAGAAATTTTGGGCCCTCAGGTCTCCATGTGCACCCACAGAGAGGGGTTACTCAGGGGTACAGCTGCAGGGAGAGGAAGGAGAAGCGCTACAAATCTATACTTCTGCTGGAAGCTGCTTCTCCTTCATTGCTCAACGTGATACACCGCTTTCAGTTGAAGGAGGGATACAGAACGGTGTATGTGAAGGCCTCCAAGGCAGTGATCAATCACTATAAGTATCAGGTTTGGAGTGAGTTCAAGGCCAAGTTTCGGAGGAGAGTGTCTGCCTACGTTGTCGACTGGAAAGAGTCTACCAATGCTGTGTCCCAAGATCGAGCTCCGGGTGTAGGCAGCAGGGCCATCAAGCCCCATGGATGGGAGAATATGTTCTGCCAAGTGCATGATAGTGCGTTGCAGGAGTTTGCA

Fln Alignment:

GFIJCBT03GFEO2___SLRCRNFGPSGLHVHPQRGVTQGYSCRERKEKRYKSILLLEAASPSLLNVIHRFQLKEGYRTVYVKASKAVINHYKYQVWSEFKAKFRRRVSAYVVDWKESTNAVSQDRAPGVGSRAIKPHGWENMFCQVHDSALQEF
B8LLQ9_______________SINCRNFGPSNLKSHPPQGVTQGYTCRQKLEQRHKSIVFLDALSPSLRNAIHHFELKPGYKTMRLTSSEAVINHYKYQAWSEFKAKFRRRVSAYVADWKDSKNLSSRDRVPGLGNEAIEPPGWENKFCEVNDTALREF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain