SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73604

Length: 477 nt

UniGene Fasta

>sp_v3.0_unigene73604
CACAATACAAGAGATTGCAGATCAGAACGCATTATTTGGGATGATATCCACATTTCATCTCAGACTGAAACCAGAAGTCAGAAAGTTAGAACTGTGAAGTCAAAAAGTTCCATGATTTCTCAGGATTCTTGTAGCTCCCCCAGACGAATCTTGCTCGTGGAAGACACACAAATCAACAGAATAATTTTCGGGAGGGTGCTTCAAAGCCTTAATGTTTACTGTGAAGAAGCTGAGAATGGGAAAGTAGCAGTGGACTATTTCAAGCAGGGCAGAACATATGATCTTGTGTTAATGGACAAAGAGATGCCTGTTATGGATGGGCATGAGGCAACAAGGCAACTGAGATCAAATGGGAGTCAAGACACCCATTGTTGCACTTACATCAAATACCTTGCAATCTGATAAAGACCTCTTCTTCCAGGCTGGTGTTGATGATTTTCAATCAAAAGCCTCTGTCCAGAGACAGACTTGTACTAA

Ace file of the UniGene sp_v3.0_unigene73604

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Signal transduction histidine kinase [Oceanobacter sp. RED65] gb\|EAT12600.1\| Signal transduction histidine kinase [Oceanobacter sp. RED65]	-	-	4.0e-15	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%

Source	Gene names
Sma3	PHYPADRAFT_38593; PHYPADRAFT_38595; PHYPADRAFT_54095;

Source	GOs	Term	Type	Identity
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002303092.1	extra response regulator [Populus trichocarpa]	3.0e-15	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC19

Fln msg: Overlapping hits, possible frame ERROR between 354 and 350, and overlapping frame ERROR between 448 and 438, Distance to subject end: 16 aas, your sequence is shorter than subject: 160 - 252

Fln protein: HNTRDCRSERIIWDDIHISSQTETRSQKVRTVKSKSSMISQDSCSSPRRILLVEDTQINRIIFGRVLQSLNVYCEEAENGKVAVDYFKQGRTYDLVLMDKEMPVMDGHEATRQLRSxxxVKTPIVALTSNTLQSDKDLFFQAGVDxxxxxxPLSRDRLVL

Protein Length: 161

Fln nts: CACAATACAAGAGATTGCAGATCAGAACGCATTATTTGGGATGATATCCACATTTCATCTCAGACTGAAACCAGAAGTCAGAAAGTTAGAACTGTGAAGTCAAAAAGTTCCATGATTTCTCAGGATTCTTGTAGCTCCCCCAGACGAATCTTGCTCGTGGAAGACACACAAATCAACAGAATAATTTTCGGGAGGGTGCTTCAAAGCCTTAATGTTTACTGTGAAGAAGCTGAGAATGGGAAAGTAGCAGTGGACTATTTCAAGCAGGGCAGAACATATGATCTTGTGTTAATGGACAAAGAGATGCCTGTTATGGATGGGCATGAGGCAACAAGGCAACTGAGATCAxxxxxxxxxGTCAAGACACCCATTGTTGCACTTACATCAAATACCTTGCAATCTGATAAAGACCTCTTCTTCCAGGCTGGTGTTGATGxxxxxxxxxxxxxxxAGCCTCTGTCCAGAGACAGACTTGTACTAA

Fln Alignment:

GFIJCBT03HFSII___HNTRDCRSERIIWDDIHISSQTETRSQKVRTVKSKSSMISQDSCSSPRRILLVEDTQINRIIFGRVLQSLNVYCEEAENGKVAVDYFKQGRTYDLVLMDKEMPVMDGHEATRQLRSxxVKTPIVALTSNTLQSDKDLFFQAGVDDxxxxPLSRDRLV
D5AC19_______________NNTRDCRSACLIWDDLHTSSQIETRSHKVRTVKSKNSRMSEDSSSPPRRILLVEDTELNRIILGKVLQTLNLHCEEAENGKVAVDYFKQGRTYDLVLMDKEMPVMDGHEATRQLRSxxVKTPIVALTGNTLQSDKDLFFEAGVDDxxxxPLSKDRLV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain