SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73556

Length: 113 nt

UniGene Fasta

>sp_v3.0_unigene73556
GACCCTAGATGAGGCTGTTGAATACCCACAAAGGCGATATCAAATTCTGTTGCGAAGTACCATGGGGCCAATTGATGTTTATCTTGTGGGTATTCAACAGCCTCATCTGGGTC

Ace file of the UniGene sp_v3.0_unigene73556

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor [Nicotiana tabacum]	-	-	3.0e-06	88%
FL-Next	tr=E2F-like protein; Pinus sylvestris (Scots pine).	-	-	0.0	100%
Sma3	Transcription factor E2F	-	-	1.559e-11	-

Source	Gene names
Sma3	E2F; E2Fa1-2; E2Fa2-2; GSVIVT00021527001; PHYPADRAFT_106759; PHYPADRAFT_122002; PHYPADRAFT_177212; POPTRDRAFT_716859; POPTRDRAFT_810382; RCOM_0225530; RCOM_1282600; VITISV_025621; e2f;

Source	GOs	Term	Type	Identity
Sma3	transcription factor complex	GO:0005667	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor E2F/dimerisation partner (TDP)	IPR003316	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	E2F Family	IPR015633	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: H6VN38

Fln msg: Distance to subject end: 125 aas, your sequence is shorter than subject: 37 - 380

Fln protein: TLDEAVEYPQRRYQILLRSTMGPIDVYLVGIQQPHLG

Protein Length: 38

Fln nts: GACCCTAGATGAGGCTGTTGAATACCCACAAAGGCGATATCAAATTCTGTTGCGAAGTACCATGGGGCCAATTGATGTTTATCTTGTGGGTATTCAACAGCCTCATCTGGGTC

Fln Alignment:

GFIJCBT03F10S8___DEAVEYPQRRYQILLRSTMGPIDVYLV
H6VN38_______________DEAVEYPQRRYQILLRSTMGPIDVYLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain