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UniGene Name: sp_v3.0_unigene73434
Length: 168 nt
 UniGene Fasta
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| >sp_v3.0_unigene73434
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Ace file of the UniGene sp_v3.0_unigene73434
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | JmjC domain containing protein | - | - | 9.0e-12 | 41% |
| FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 93% |
| Sma3 | ENBP1 protein | - | - | 4.65e-08 | - |
| Source | Gene names |
|---|---|
| Sma3 | AT1G09060; AT4g00990; At1g09060; At1g11950; At1g62310; At3g07610; At4g00990; B1175F05.34; CHLREDRAFT_167987; ENBP1; F12F1.18; F7G19.7; GSVIVT00006884001; GSVIVT00008625001; GSVIVT00011146001; GSVIVT00022742001; GSVIVT00023403001; GSVIVT00031870001; GSVIVT |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
| Sma3 | RNA binding | GO:0003723 | Molecular Function | 0.0 | - |
| Sma3 | RNA-directed DNA polymerase activity | GO:0003964 | Molecular Function | 0.0 | - |
| Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
| Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
| Sma3 | RNA-dependent DNA replication | GO:0006278 | Biological Process | 0.0 | - |
| Sma3 | pollen development | GO:0009555 | Biological Process | 0.0 | - |
| Sma3 | flower development | GO:0009908 | Biological Process | 0.0 | - |
| Sma3 | DNA methylation on cytosine | GO:0032776 | Biological Process | 0.0 | - |
| Sma3 | histone H3-K9 demethylation | GO:0033169 | Biological Process | 0.0 | - |
| Sma3 | leaf development | GO:0048366 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Reverse transcriptase | IPR000477 | - | 0.0 | - |
| Sma3 | Peptidase M14, carboxypeptidase A | IPR000834 | - | 0.0 | - |
| Sma3 | Zinc finger, RING-type | IPR001841 | - | 0.0 | - |
| Sma3 | JmjC domain | IPR003347 | - | 0.0 | - |
| Sma3 | IPR013129 | - | 0.0 | - | |
| Sma3 | WRC | IPR014977 | - | 0.0 | - |
| Sma3 | AT hook, DNA-binding motif | IPR017956 | - | 0.0 | - |
| Sma3 | Zinc finger, C3HC4 RING-type | IPR018957 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT4G00990.1 | Transcription factor jumonji (jmjC) domain-containing protein chr4:427035-431535 FORWARD LENGTH=840 | 1.0e-22 | 85% |
| RefSeq | Arabidopsis thaliana | NP_192008.3 | Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] | 1.0e-22 | 85% |
| RefSeq | Populus trichocarpa | XP_002306344.1 | predicted protein [Populus trichocarpa] | 2.0e-23 | 89% |
| Full-Lengther Next Prediction |
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Fln status: Putative N-terminus
Fln database: coniferopsida.fasta
Fln subject: D5ABD5
Fln msg: Distance to subject end: 83 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 55 - 133
Fln protein:
V
Protein Length:
56
Fln nts:
C
Fln Alignment:
GG46A6U02F9NAC___LKEEYGVEAWTFEQHLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPE
D5ABD5_______________LKEEYQVEPWTFEQHLGEAVFIPAGCPHQVRNLKSCIKVALNFVSPE
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
