SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73432

Length: 136 nt

UniGene Fasta

>sp_v3.0_unigene73432
CGTCGTGACCTTGGCTGTCACTCATGTCTGGGTCGAAGAGGGTGTGGAATCTCACCAAGAACCAGAGCTTCACTTTGGGCCCCGGGGATTATCTCTATACTCCTGCGCCTGATGTGCACAGGGTCAAGTATTTTAC

Ace file of the UniGene sp_v3.0_unigene73432

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-damage-repair/toleration protein-like n=2 Tax=Oryza sativa RepID=Q8LHG8_ORYSJ	-	-	5.0e-08	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	Gene names
Sma3	GSVIVT00031130001; VITISV_010562;

Source	GOs	Term	Type	e value	Identity
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribose/galactose isomerase	IPR003500	-	-
Sma3	DNA-damage-repair/toleration protein, DRT102	IPR012100	-	-
Sma3	Cupin 2, conserved barrel	IPR013096	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002328509.1	predicted protein [Populus trichocarpa]	1.0e-11	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NK44

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 35 aas, your sequence is shorter than subject: 44 - 308

Fln protein: S*PWLSLMSGSKRVWNLTKNQSFTLGPGDYLYTPAPDVHRVKYF

Protein Length: 45

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTCTGGGTCGAAGAGGGTGTGGAATCTCACCAAGAACCAGAGCTTCACTTTGGGCCCCGGGGATTATCTCTATACTCCTGCGCCTGATGTGCACAGGGTCAAGTATTTTAC

Fln Alignment:

GG46A6U02HRQ1C___LSLMSGSKRVWNLTKNQSFTLGPGDYLYTPAPDVHRVKYF
A9NK44_______________LVVVSGSKRVWNLTKNQCFDLGPGDYLYTPAPDVHRVQYF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain