SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73404

Length: 94 nt

UniGene Fasta

>sp_v3.0_unigene73404
CATCCTCCTTGTTTCTCTGATGGTAATGAATAGTGTCCATGCAGATCCGGAGGCGTTGCAGGACTTCTGTGTGGCGACACAAAGTCTTCTATTT

Ace file of the UniGene sp_v3.0_unigene73404

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Germin-like protein n=5 Tax=Pinaceae RepID=O65010_PINRA	-	-	5.0e-06	87%
FL-Next	tr=Germin-like protein; Pinus sylvestris (Scots pine).	-	-	0.0	87%
Sma3	Germin-like protein	-	-	7.595e-08	-

Source	Gene names
Sma3	GER1; PRGer1; PcGER1;

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	nutrient reservoir activity	GO:0045735	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Germin	IPR001929	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8RY52

Fln msg: Distance to subject end: 178 aas, atg_distance in limit (1-15): atg_distance = 11, your sequence is shorter than subject: 25 - 220

Fln protein: MVMNSVHADPEALQDFCVATQSLLF

Protein Length: 26

Fln nts: CATCCTCCTTGTTTCTCTG_-_ATGGTAATGAATAGTGTCCATGCAGATCCGGAGGCGTTGCAGGACTTCTGTGTGGCGACACAAAGTCTTCTATTT

Fln Alignment:

GG46A6U02FPHNJ___ILLVSLMVMNSVHADPEALQDFCVA-TQSLLF
Q8RY52_______________ILLVSLMVMNSVHADPEALQDFCVADTKSTIF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain