SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73272

Length: 182 nt

UniGene Fasta

>sp_v3.0_unigene73272
CGTCGTGACCTTGGCTGTCACTCATGTCTTAGATTTTTTGCATTATTGCCGTATTTTAACATCTGAGCAGGGCTGTTCTCTTGTTTTACTTTCACATCAAGATATTTATGCTAGTATGGACAATTCAAGTTTCATCCGGCATCTAGAGTACTTTGCAGATATTGTGATAGATGTTGAACCTT

Ace file of the UniGene sp_v3.0_unigene73272

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF2348 domain containing protein	-	-	2.0e-10	36%
FL-Next	sp=Elongator complex protein 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%

Source	Gene names
Sma3	RCOM_0743820;

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0405	IPR018627	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G10090.1	ELP6 elongator protein 6 chr4:6305455-6307286 FORWARD LENGTH=262	6.0e-17	58%
RefSeq	Arabidopsis thaliana	NP_567351.1	elongator protein 6 [Arabidopsis thaliana]	7.0e-17	58%
RefSeq	Populus trichocarpa	XP_002312051.1	predicted protein [Populus trichocarpa]	5.0e-16	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8L9Y2

Fln msg: Distance to subject end: 53 aas, your sequence is shorter than subject: 60 - 262

Fln protein: VVTLAVTHVLDFLHYCRILTSEQGCSLVLLSHQDIYASMDNSSFIRHLEYFADIVIDVEP

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTCTTAGATTTTTTGCATTATTGCCGTATTTTAACATCTGAGCAGGGCTGTTCTCTTGTTTTACTTTCACATCAAGATATTTATGCTAGTATGGACAATTCAAGTTTCATCCGGCATCTAGAGTACTTTGCAGATATTGTGATAGATGTTGAACCTT

Fln Alignment:

GG46A6U02IE1IB___HVLDFLHYCRILTSEQGCSLVLLSHQDIYASMDNSSFIRHLEYFADIVIDVEP
Q8L9Y2_______________HVLDFLHYCHTLSSESNCSLVILNHEDIYASMERPAFLLQMVCLADVVIKAEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain