SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73233

Length: 365 nt

UniGene Fasta

>sp_v3.0_unigene73233
CGTCGTGACCTTGGCTGTCACTCATTTTATATATTTTCTCTGCTTGGGGCATTTGTTAGTGATTCATACCTGGGACGCTACCGGACATGCACTCTGTTTCTCATCATTTTTGTAGTGGGTTTGGTGCTTTTGGCATTATCATCTCAGCTGATTTTAGTGAAGCCTACTAACTGTGGAGACGGAAGCTTGAGTTGCCAATCTCCATCAACAATGGGGGATTGGAGTGTTCTATTTATCAATCTACCTTGTGGCTTTAGGAAACGGAGGATACCAGCCCTCGATAGCGACGTTTGGTGCAGACCAATTTGATGAAGAAGATGACACAGAAAGACCCTCCAAAATAGCTTTCTTCAGCTGGTTCTACC

Ace file of the UniGene sp_v3.0_unigene73233

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter, putative n=1 Tax=Ricinus communis RepID=B9S1I2_RICCO	-	-	4.0e-25	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Peptide transporter, putative	-	-	1.982e-11	-

Source	Gene names
Sma3	AT4g21680; At4g21680/F17L22_140; At5g19640; F17L22.140; GSVIVT00015776001; GSVIVT00018968001; MtrDRAFT_AC149128g15v2; OJ1191_G08.33; OJ2056_H01.5; Os02g0716800; OsI_08696; OsI_22764; OsJ_08148; OsJ_21165; P0421H01.23; POPTRDRAFT_178135; POPTRDRAFT_743181;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G21680.1	NRT1.8 NITRATE TRANSPORTER 1.8 chr4:11517540-11519576 REVERSE LENGTH=589	4.0e-24	68%
RefSeq	Arabidopsis thaliana	NP_193899.2	nitrate transporter 1.8 [Arabidopsis thaliana]	5.0e-24	68%
RefSeq	Populus trichocarpa	XP_002329526.1	predicted protein [Populus trichocarpa]	2.0e-26	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW85

Fln msg: Separated hits, possible frame ERROR between 87 and 164, Distance to subject end: 396 aas, your sequence is shorter than subject: 122 - 574

Fln protein: RRDLGCHSFYIFSLLGAFVSDSYLGRYRxxxxxxxxxxxxxxxxxxxxxxxxxxxLLTVETEA*VANLHQQWGIGVFYLSIYLVALGNGGYQPSIATFGADQFDEEDDTERPSKIAFFSWFY

Protein Length: 123

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTATATATTTTCTCTGCTTGGGGCATTTGTTAGTGATTCATACCTGGGACGCTACCGGACxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCTACTAACTGTGGAGACGGAAGCTTGAGTTGCCAATCTCCATCAACAATGGGGGATTGGAGTGTTCTATTTATCAATCTACCTTGTGGCTTTAGGAAACGGAGGATACCAGCCCTCGATAGCGACGTTTGGTGCAGACCAATTTGATGAAGAAGATGACACAGAAAGACCCTCCAAAATAGCTTTCTTCAGCTGGTTCTACC

Fln Alignment:

GG46A6U02H781I___LGAFVSDSYLGRYRTxxxxxxxxxxxxxxxxxxxxxxxxxxLLTVETEA*VANLHQQWGIGVFYLSIYLVALGNGGYQPSIATFGADQFDEEDDTERPSKIAFFSWFY
A9NW85_______________LGAFVADSYLGRYWTxxxxxxxxxxxxxxxxxxxxxxxxxxLILVTLSASLKSLNQ---IGFFFFSIYLVALGQGGHKPCLEAFGADQFEEDDPIEKKHKSSFFNYWY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain