SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene73123

Length: 325 nt

UniGene Fasta

>sp_v3.0_unigene73123
CGTCGTGACCTTGGCTGTCACTCAAAGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCGGCCCTCACAGACCAGGAATCCTGCCTCAATGGCTTTCAGGATCTCAAAGCCACCGGGAACGTTACGGCCATGGTCACCGGCCGCGTTCAGAATGTGCGCAAATTTATAAGTAATGCCCTCGGTCTAGTCAACGTCTTCGCTGCCACCGGATGAGGAGAGGAGGTCCATGTCTGAAGCCTTCAAGTGCTCCTCGCCTCAAATAATATATTTAGTATTTCATAGAATCTGTATACCATAGCTTTTTGGTTCTGGCCTCGAGACA

Ace file of the UniGene sp_v3.0_unigene73123

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	invertase/pectin methylesterase inhibitor-like protein [Arabidopsis thaliana] gb\|AAD12710.1\| unknown protein [Arabidopsis thaliana] gb\|AAM15060.1\| unknown protein [Arabidopsis thaliana] gb\|ABN04802.1\| At2g01610 [Arabidopsis thaliana] gb\|AEC05473.1\| invert	-	-	2.0e-12	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%

Source	Gene names
Sma3	POPTRDRAFT_1090648; POPTRDRAFT_419607; PRE79; RCOM_0628770;

Source	GOs	Term	Type	e value	Identity
Sma3	enzyme inhibitor activity	GO:0004857	Molecular Function	0.0	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pectinesterase inhibitor	IPR006501	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G01610.1	Plant invertase/pectin methylesterase inhibitor superfamily protein chr2:274124-274792 REVERSE LENGTH=222	4.0e-17	52%
RefSeq	Arabidopsis thaliana	NP_178270.1	invertase/pectin methylesterase inhibitor-like protein [Arabidopsis thaliana]	5.0e-17	52%
RefSeq	Populus trichocarpa	XP_002314795.1	predicted protein [Populus trichocarpa]	8.0e-17	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK62

Fln msg: your sequence is shorter than subject: 72 - 210

Fln protein: RRDLGCHSKFQMSNVQTWMSAALTDQESCLNGFQDLKATGNVTAMVTGRVQNVRKFISNALGLVNVFAATG*

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCGGCCCTCACAGACCAGGAATCCTGCCTCAATGGCTTTCAGGATCTCAAAGCCACCGGGAACGTTACGGCCATGGTCACCGGCCGCGTTCAGAATGTGCGCAAATTTATAAGTAATGCCCTCGGTCTAGTCAACGTCTTCGCTGCCACCGGATGA___GGAGAGGAGGTCCATGTCTGAAGCCTTCAAGTGCTCCTCGCCTCAAATAATATATTTAGTATTTCATAGAATCTGTATACCATAGCTTTTTGGTTCTGGCCTCGAGACA

Fln Alignment:

GG46A6U02IENNU___KFQMSNVQTWMSAALTDQESCLNGFQDLKATGNVTAMVTGRVQNVRKFISNALGLVNVFAATG*G
A9NK62_______________QFQMGNVQTWMSAALTDQDSCLNGFQDLDTSGKVTGTVTGRVQNVCKLISNALALINTFAATGAG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain