SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72975

Length: 302 nt

UniGene Fasta

>sp_v3.0_unigene72975
CGTCGTGACCTTGGCTGTCACTCAACTGTGGCAGAATGGTGATAACCGACCCCAATCCGGTGTGGACTATGGAGACCATGACAGGGCCGAGGACCATGGGCGACATGCTCCTTCTCCCAAACGGAGAAGTGCTGATCATCAATGGCGCCCAGAAAGGTGTTGCTGGGTGGGACATGGCCACCACTCCCGTCTTCACCCCTTTACTCTACCAACCCAACGCCGCTCTTGGCTCCCGTTTCATCATCCTTGCACCCAGTAACATTGCCAGAATGTACCACTCCTCAGCAAGTATATTGGCCGAC

Ace file of the UniGene sp_v3.0_unigene72975

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glyoxal oxidase [Vitis pseudoreticulata]	-	-	2.0e-25	56%
FL-Next	tr=Glyoxal oxidase 5; Linum grandiflorum.	-	-	0.0	64%
Sma3	Galactose oxidase, putative	-	-	1.098e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Galactose oxidase.	EC:1.1.3.9	-	1.985e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		1.985e-19	%

Source	Gene names
Sma3	AT3G53950; At1g19900; At1g67290; At1g75620; At3g53950; At3g53950/F5K20_250; At3g57620; At5g19580; CHLREDRAFT_196818; CHLREDRAFT_196819; CHLREDRAFT_196821; F14L17.20; F15B8.190; F5K20_250; F6F9.4; GOX6; GOX7; GOX8; GSVIVT00000516001; GSVIVT00014487001; GSV

Source	GOs	Term	Type	e value	Identity
Sma3	galactose oxidase activity	GO:0045480	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Glyoxal oxidase, N-terminal	IPR009880	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G14430.1	glyoxal oxidase-related protein chr1:4934359-4936053 FORWARD LENGTH=564	1.0e-29	56%
RefSeq	Arabidopsis thaliana	NP_172895.2	glyoxal oxidase-related protein [Arabidopsis thaliana]	2.0e-29	56%
RefSeq	Populus trichocarpa	XP_002312784.1	predicted protein [Populus trichocarpa]	5.0e-31	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: G9M8U8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 152 aas, your sequence is shorter than subject: 100 - 645

Fln protein: S*PWLSLNCGRMVITDPNPVWTMETMTGPRTMGDMLLLPNGEVLIINGAQKGVAGWDMATTPVFTPLLYQPNAALGSRFIILAPSNIARMYHSSASILAD

Protein Length: 101

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTGTGGCAGAATGGTGATAACCGACCCCAATCCGGTGTGGACTATGGAGACCATGACAGGGCCGAGGACCATGGGCGACATGCTCCTTCTCCCAAACGGAGAAGTGCTGATCATCAATGGCGCCCAGAAAGGTGTTGCTGGGTGGGACATGGCCACCACTCCCGTCTTCACCCCTTTACTCTACCAACCCAACGCCGCTCTTGGCTCCCGTTTCATCATCCTTGCACCCAGTAACATTGCCAGAATGTACCACTCCTCAGCAAGTATATTGGCCGAC

Fln Alignment:

GG46A6U02G6ITG___NCGRMVITDPNPVWTMETMTGPRTMGDMLLLPNGEVLIINGAQKGVAGWDMATTPVFTPLLYQPNAALGSRFIILAPSNIARMYHSSASILAD
G9M8U8_______________DCGRIRITDPNPVWKRELMPSARIMGDMMLLPSGEVLIINGAKRGASGWGFAREPNFTPLLYTPKAKLGKRFRELAPSAIPRMYHSSSVVLPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain