SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72713

Length: 251 nt

UniGene Fasta

>sp_v3.0_unigene72713
CGTCGTGACCTTGGCTGTCACTCATTCAGGCACATTACACAGGTTATTCATCCTATTCATGATCAGACTATTTACCTGAATGAGTATCATAAGAGGAAGCTGAAAGAAGAATATGGAGTAGAGGCATGGACATTTGAACAAAATCTTTACGAGGCAGTCTTCATTCCAGCTGGGTGTCCTCATCAAGTTCGGAACCTCAAGTCATGTATTAAAGTTGCCATGGATTTTGTATCCCCTGAGCATTTAGNGCA

Ace file of the UniGene sp_v3.0_unigene72713

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	JmjC domain containing protein	-	-	3.0e-12	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	ENBP1 protein	-	-	4.26e-08	-

Source	Gene names
Sma3	AT1G09060; AT4g00990; At1g09060; At1g11950; At1g62310; At3g07610; At4g00990; B1175F05.34; CHLREDRAFT_167987; ENBP1; F12F1.18; GSVIVT00006884001; GSVIVT00008625001; GSVIVT00011146001; GSVIVT00022742001; GSVIVT00023403001; GSVIVT00031870001; GSVIVT000372560

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	DNA methylation on cytosine	GO:0032776	Biological Process	-
Sma3	histone H3-K9 demethylation	GO:0033169	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	JmjC domain	IPR003347	-	-
Sma3		IPR013129	-	-
Sma3	WRC	IPR014977	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G62310.1	transcription factor jumonji (jmjC) domain-containing protein chr1:23036039-23039301 REVERSE LENGTH=883	7.0e-33	69%
RefSeq	Arabidopsis thaliana	NP_176421.1	transcription factor jumonji domain-containing protein [Arabidopsis thaliana]	9.0e-33	69%
RefSeq	Populus trichocarpa	XP_002321404.1	predicted protein [Populus trichocarpa]	3.0e-33	72%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABD5

Fln msg: Distance to subject end: 80 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 83 - 133

Fln protein: RRDLGCHSFRHITQVIHPIHDQTIYLNEYHKRKLKEEYGVEAWTFEQNLYEAVFIPAGCPHQVRNLKSCIKVAMDFVSPEHLE

Protein Length: 84

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCAGGCACATTACACAGGTTATTCATCCTATTCATGATCAGACTATTTACCTGAATGAGTATCATAAGAGGAAGCTGAAAGAAGAATATGGAGTAGAGGCATGGACATTTGAACAAAATCTTTACGAGGCAGTCTTCATTCCAGCTGGGTGTCCTCATCAAGTTCGGAACCTCAAGTCATGTATTAAAGTTGCCATGGATTTTGTATCCCCTGAGCATTTAGaGCA

Fln Alignment:

GG46A6U02FXWXG___KLKEEYGVEAWTFEQNLYEAVFIPAGCPHQVRNLKSCIKVAMDFVSPEHLE
D5ABD5_______________KLKEEYQVEPWTFEQHLGEAVFIPAGCPHQVRNLKSCIKVALNFVSPENLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain