SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72703

Length: 329 nt

UniGene Fasta

>sp_v3.0_unigene72703
CGTCGTGACCTTGGCTGTCACTCAGGATTTTTTGGGATTAGGAGATGATCACAACGCTGTAAATGACCTCCAGGTAAATATGATAATCACGGACTACTGTATGCCTGGAATTTCTGGCTACGATTTGCTCAAGAGAGTAAAGGAATCCTCAAAGCTCAAGGAGATTCCTGTGGTGGTCATGTCCTCTGAGAACGTGCCTTCTCGAAAGCGCAGATGTCTGGATGAAGGCGCAGAAGAGTTCATATTGAAGCCCGTGCAGATCTCAGATGTAAAACGACTGAGAGAGTATATGAGCAGAGTTCAGGAGGAAAGCAGTTATGTCCAAATGG

Ace file of the UniGene sp_v3.0_unigene72703

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Response regulator 1 n=1 Tax=Pinus pinea RepID=C0LLL0_PINPI	-	-	2.0e-29	65%
FL-Next	tr=Response regulator 1; Pinus pinea (Italian stone pine).	-	-	0.0	65%
Sma3	Type-a response regulator	-	-	7.514e-39	-

Source	Gene names
Sma3	ARR15; ARR16; ARR17; ARR3; ARR4; ARR5; ARR6; ARR7; ARR8; ARR9; ATRR1; ATRR2; ATRR3; ATRR4; At1g10470; At1g19050; At1g59940; At1g74890; At2g40670; At2g41310; At3g48100; At3g56380; At3g57040; At5g62920; B1250G12.17; F13H10.14; F14D16.20; F23H11.25; F24I3.12

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	circadian rhythm	GO:0007623	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	cytokinin mediated signaling pathway	GO:0009736	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-
Sma3	red light signaling pathway	GO:0010161	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	stem cell maintenance	GO:0019827	Biological Process	-
Sma3	regulation of circadian rhythm	GO:0042752	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G59940.1	ARR3 response regulator 3 chr1:22065894-22066895 REVERSE LENGTH=231	2.0e-36	63%
RefSeq	Arabidopsis thaliana	NP_176202.1	two-component response regulator ARR3 [Arabidopsis thaliana]	3.0e-36	63%
RefSeq	Populus trichocarpa	XP_002322625.1	type-a response regulator [Populus trichocarpa]	6.0e-35	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0LLL0

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 109 - 184

Fln protein: VVTLAVTQDFLGLGDDHNAVNDLQVNMIITDYCMPGISGYDLLKRVKESSKLKEIPVVVMSSENVPSRKRRCLDEGAEEFILKPVQISDVKRLREYMSRVQEESSYVQM

Protein Length: 110

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGATTTTTTGGGATTAGGAGATGATCACAACGCTGTAAATGACCTCCAGGTAAATATGATAATCACGGACTACTGTATGCCTGGAATTTCTGGCTACGATTTGCTCAAGAGAGTAAAGGAATCCTCAAAGCTCAAGGAGATTCCTGTGGTGGTCATGTCCTCTGAGAACGTGCCTTCTCGAAAGCGCAGATGTCTGGATGAAGGCGCAGAAGAGTTCATATTGAAGCCCGTGCAGATCTCAGATGTAAAACGACTGAGAGAGTATATGAGCAGAGTTCAGGAGGAAAGCAGTTATGTCCAAATGG

Fln Alignment:

GG46A6U02G7JNS___FLGLGDDHNAVN--DLQVNMIITDYCMPGISGYDLLKRVKESSKLKEIPVVVMSSENVPSRKRRCLDEGAEEFILKPVQISDVKRLREYM-----SRVQEESS
C0LLL0_______________FLGLEDDEDDLNVDNIQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISRCMSEGAEEFLLKPVQLSDVKKLRSHILNKGGSRDQQSTS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain