SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72590

Length: 200 nt

UniGene Fasta

>sp_v3.0_unigene72590
CGTCGTGACCTTGGCTGTCACTCATGTTTTCTCCCAATTCTATTTATTTCCCCCTGTGTTTCTTTGGGATTGTTTCAATTGGGGCGGTGGCAACCACTGTCAATCCGGTGTATACCGTCATGGAAGTAGCCAAACAGGCCCAGGATTCGAAAGCCAAACTCATAATAACTGTCCCAGAGCTATGGGATACAGTTAAAGAT

Ace file of the UniGene sp_v3.0_unigene72590

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9SCH9_RICCO	-	-	3.0e-16	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	4-coumarate-coa ligase	-	-	1.84e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing).	EC:1.13.12.7	-	2.699e-08	-

Source	Gene names
Sma3	GSVIVT00022179001; POPTRDRAFT_831184; POPTRDRAFT_837028; Ptr4CL6\|ACLL12; Ptr4CL8; RCOM_0473330; RCOM_1354540; VITISV_031619;

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G05160.1	AMP-dependent synthetase and ligase family protein chr4:2664451-2666547 FORWARD LENGTH=544	9.0e-17	55%
RefSeq	Arabidopsis thaliana	NP_192425.1	4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana]	1.0e-16	55%
RefSeq	Populus trichocarpa	XP_002329324.1	acyl:coa ligase [Populus trichocarpa]	7.0e-21	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRA6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 398 aas, your sequence is shorter than subject: 66 - 540

Fln protein: S*PWLSLMFSPNSIYFPLCFFGIVSIGAVATTVNPVYTVMEVAKQAQDSKAKLIITVPELWDTVKD

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTTCTCCCAATTCTATTTATTTCCCCCTGTGTTTCTTTGGGATTGTTTCAATTGGGGCGGTGGCAACCACTGTCAATCCGGTGTATACCGTCATGGAAGTAGCCAAACAGGCCCAGGATTCGAAAGCCAAACTCATAATAACTGTCCCAGAGCTATGGGATACAGTTAAAGAT

Fln Alignment:

GG46A6U02FWTNN___LMFSPNSIYFPLCFFGIVSIGAVATTVNPVYTVMEVAKQAQDSKAKLIITVPELWDTVKD
B8LRA6_______________LLFSPNSIYFPVCFFGIVSIGAVATTVNPLYTTMEISKQIQDSKLKLIVTVPELWDKVKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain