SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72376

Length: 197 nt

UniGene Fasta

>sp_v3.0_unigene72376
CGTCGTGACCTTGGCTGTCACTCATTCTCAGTACCTTGGCTATCCCATTCTAGGTGATGAAGTATATGGAGGAACAGAAGGTATGGCATTATCTCGAGTGAGACCAAAAGTGCCATCAAAGTATCATGGAGTCCTTTCTAAACTAATTTCAAACCTCCAGAGACCTTGTCTCCATGCCTTGGCTCTTGGATTTGAAC

Ace file of the UniGene sp_v3.0_unigene72376

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA pseudourine synthase 2 [Arabidopsis thaliana] sp\|Q3ECD0.1\|PUS2_ARATH RecName: Full=RNA pseudourine synthase 2, chloroplastic; AltName: Full=RNA pseudouridylate synthase 2; AltName: Full=RNA-uridine isomerase 2; Flags: Precursor gb\|AEE35790.1\| RNA pseu	-	-	1.0e-10	52%
FL-Next	sp=RNA pseudourine synthase 2, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	0.0	62%

Source	Gene names
Sma3	LOC_Os06g50360; Os06g0717400; OsI_24484; OsJ_22675; P0481E08.45; P0541C02.12; POPTRDRAFT_642899; RCOM_1298450; VITISV_034413;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	pseudouridine synthase activity	GO:0009982	Molecular Function	-
Sma3	pseudouridine synthesis	GO:0001522	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-
Sma3	Pseudouridine synthase, RsuA and RluB/C/D/E/F	IPR006145	-	-
Sma3	Pseudouridine synthase, RluC/RluD, conserved site	IPR006224	-	-
Sma3	Pseudouridine synthase, RluC/RluD	IPR006225	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G76050.2	Pseudouridine synthase family protein chr1:28540858-28542826 FORWARD LENGTH=430	5.0e-15	52%
RefSeq	Arabidopsis thaliana	NP_974151.1	RNA pseudourine synthase 2 [Arabidopsis thaliana]	7.0e-15	52%
RefSeq	Populus trichocarpa	XP_002301949.1	predicted protein [Populus trichocarpa]	3.0e-17	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5Z8P2

Fln msg: Distance to subject end: 45 aas, your sequence is shorter than subject: 65 - 445

Fln protein: VVTLAVTHSQYLGYPILGDEVYGGTEGMALSRVRPKVPSKYHGVLSKLISNLQRPCLHALALGFE

Protein Length: 66

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTCAGTACCTTGGCTATCCCATTCTAGGTGATGAAGTATATGGAGGAACAGAAGGTATGGCATTATCTCGAGTGAGACCAAAAGTGCCATCAAAGTATCATGGAGTCCTTTCTAAACTAATTTCAAACCTCCAGAGACCTTGTCTCCATGCCTTGGCTCTTGGATTTGAAC

Fln Alignment:

GG46A6U02FKATE___HSQYLGYPILGDEVYGGTEGMALSRVRPKVPSKYHGVLSKLISNLQRPCLHALALGFE
Q5Z8P2_______________HAKYLGIPLLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain