SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72295

Length: 261 nt

UniGene Fasta

>sp_v3.0_unigene72295
CGTCGTGACCTTGGCTGTCACTCAATCTAGGTTGACTGGAACAAGTGGTGTGATGAGGATGAAGAAGAATTATCAAAGTCGGATGCTTTTAACTTGGAAGACATAAATGACATTTCGAAATCTGAAGCCACAGATGATGATGGAAGTGATGATGAAGGCATGCTATCATGTATTAGACCTTCCCGATTTGGAAAAGGCAAGGGACAAGTGATTCTTAAAGAACTACAAAAGGGACTGAAGACCAGATAGTTTTCAAATTTG

Ace file of the UniGene sp_v3.0_unigene72295

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	7.0e-19	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	CS-like domain	IPR007052	-	0.0	-
Sma3	CS domain	IPR017447	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMY4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 83 - 157

Fln protein: RRDLGCHSI*VDWNKWCDEDEEELSKSDAFNLEDINDISKSEATDDDGSDDEGMLSCIRPSRFGKGKGQVILKELQKGLKTR*

Protein Length: 84

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTAGGTTGACTGGAACAAGTGGTGTGATGAGGATGAAGAAGAATTATCAAAGTCGGATGCTTTTAACTTGGAAGACATAAATGACATTTCGAAATCTGAAGCCACAGATGATGATGGAAGTGATGATGAAGGCATGCTATCATGTATTAGACCTTCCCGATTTGGAAAAGGCAAGGGACAAGTGATTCTTAAAGAACTACAAAAGGGACTGAAGACCAGATAG___TTTTCAAATTTG

Fln Alignment:

GG46A6U02FTPBY___VDWNKWCDEDEEELSKSDAFNLEDINDISKSEATDDDGSDDEGML
B8LMY4_______________VDWNKWCDEDEEESSKLDAFNLEDINDISKSEATDDDASDDEGML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain