SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72285

Length: 125 nt

UniGene Fasta

>sp_v3.0_unigene72285
CGTCGTGACCTTGGCTGTCACTCATTCATTGGTTGGCATTGTACTGTTGGGCAGTGGGCCAGAGTGGAAAACATGACCGTGTTAGGGGAGGATGTGTCATGTTTGTGATTGAGGTATATAGCAAT

Ace file of the UniGene sp_v3.0_unigene72285

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GDP-mannose pyrophosphorylase [Pinus taeda]	-	-	3.0e-07	96%
FL-Next	tr=GDP-mannose pyrophosphorylase; Pinus taeda (Loblolly pine).	-	-	0.0	96%
Sma3	GDP-mannose pyrophosphorylase	-	-	1.029e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mannose-1-phosphate guanylyltransferase (GDP).	EC:2.7.7.22	-	1.629e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Fructose and mannose metabolism	00051	1.629e-08	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	1.629e-08	%
Sma3	Metabolic pathways	01100	1.629e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.629e-08	%

Source	Gene names
Sma3	GMP; GMP1; GMP2; GMPase; GSVIVT00018410001; Gmp; PHYPADRAFT_198340; PHYPADRAFT_215432;

Source	GOs	Term	Type	Identity
Sma3	mannose-1-phosphate guanylyltransferase (GDP) activity	GO:0008928	Molecular Function	-
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	Nucleotidyl transferase	IPR005835	-	-
Sma3	Hexapeptide transferase, conserved site	IPR018357	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A6N836

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 20 aas, your sequence is shorter than subject: 36 - 361

Fln protein: RRDLGCHSFIGWHCTVGQWARVENMTVLGEDVSCL*

Protein Length: 37

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCATTGGTTGGCATTGTACTGTTGGGCAGTGGGCCAGAGTGGAAAACATGACCGTGTTAGGGGAGGATGTGTCATGTTTGTGATTGAGGTATATAGCAAT

Fln Alignment:

GG46A6U02HETZD___SFIGWHCTVGQWARVENMTVLGEDV
A6N836_______________SIIGWHCTVGQWARVENMTVLGEDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain