SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72196

Length: 201 nt

UniGene Fasta

>sp_v3.0_unigene72196
CGTCGTGACCTTGGCTGTCACTCAGGGGTCCCAGTGAGAGTGAGCTACGGTCTAAGGCAGAGGCAGAGGAACATGCCATTCGTCGACTTCGAATGTGTCTTCGAGATGTTTGTAACAGACTTCTGTATGAAAAACGGTTCAGTATATTCCACTATCCTGTTATGGATGAAGATGCTCCCGATTATCATTCCATAGTTACAA

Ace file of the UniGene sp_v3.0_unigene72196

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative (EC:3.6.4.3)	-	-	9.0e-20	73%
FL-Next	sp=ATPase family AAA domain-containing protein At1g05910; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Sma3	Bromodomain protein	-	-	4.831e-07	-

Source	Gene names
Sma3	BRAT1501; BRD906; BRD911; GSVIVT00001933001; Os09g0515100; OsI_32034; OsJ_30004; P0450E05.23; PHYPADRAFT_185326; POPTRDRAFT_562244; POPTRDRAFT_594506; RCOM_0068780; T20M3.19; brd103;

Source	GOs	Term	Type	e value	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	0.0	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Bromodomain	IPR001487	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G05910.1	cell division cycle protein 48-related / CDC48-related chr1:1790796-1796503 FORWARD LENGTH=1210	4.0e-24	70%
RefSeq	Arabidopsis thaliana	NP_563753.1	cell division cycle protein 48-like protein [Arabidopsis thaliana]	5.0e-24	70%
RefSeq	Populus trichocarpa	XP_002327967.1	bromodomain protein [Populus trichocarpa]	7.0e-25	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: F4IAE9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 275 aas, your sequence is shorter than subject: 66 - 1210

Fln protein: S*PWLSLRGPSESELRSKAEAEEHAIRRLRMCLRDVCNRLLYEKRFSIFHYPVMDEDAPDYHSIVT

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGTCCCAGTGAGAGTGAGCTACGGTCTAAGGCAGAGGCAGAGGAACATGCCATTCGTCGACTTCGAATGTGTCTTCGAGATGTTTGTAACAGACTTCTGTATGAAAAACGGTTCAGTATATTCCACTATCCTGTTATGGATGAAGATGCTCCCGATTATCATTCCATAGTTACAA

Fln Alignment:

GG46A6U02J4N3B___GPSESELRSKAEAEEHAIRRLRMCLRDVCNRLLYEKRFSIFHYPVMDEDAPDYHSIV
F4IAE9_______________GPKPAEVKAKVEAEQHALRRLRMCLRDVCNRILYDKRFSAFHFPVTDEDAPNYRSII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain