SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72024

Length: 168 nt

UniGene Fasta

>sp_v3.0_unigene72024
CGTCGTGACCTTGGCTGTCACTCATTTTCTAGGGATGCCAGAGTGCAATGTGAATCTTGCCCAATGTGTTGCATATCTATCGTTAGCACCCAAATCTGTGGCTGTTTATCAGGGCATTGTAGCAGCCCAAAGATTGGTAAAAGAGAAGGGTCAGAATGAGCCCGTGCC

Ace file of the UniGene sp_v3.0_unigene72024

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative Werner helicase-interacting protein [Arabidopsis thaliana]	-	-	3.0e-12	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%

Source	Gene names
Sma3	At1g24290; At1g24290/F3I6_23; F3I6.23; GSVIVT00037524001; PHYPADRAFT_155208; PHYPADRAFT_230236; POPTRDRAFT_889921; WHIP;

Source	GOs	Term	Type	e value	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	0.0	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	CbxX/CfqX	IPR000641	-	-
Sma3		IPR001984	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G24290.1	AAA-type ATPase family protein chr1:8612650-8614227 REVERSE LENGTH=525	6.0e-17	66%
RefSeq	Arabidopsis thaliana	NP_173839.1	AAA-type ATPase-like protein [Arabidopsis thaliana]	8.0e-17	66%
RefSeq	Populus trichocarpa	XP_002316599.1	predicted protein [Populus trichocarpa]	3.0e-16	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS10

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 55 - 721

Fln protein: VVTLAVTHFLGMPECNVNLAQCVAYLSLAPKSVAVYQGIVAAQRLVKEKGQNEPV

Protein Length: 56

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCTAGGGATGCCAGAGTGCAATGTGAATCTTGCCCAATGTGTTGCATATCTATCGTTAGCACCCAAATCTGTGGCTGTTTATCAGGGCATTGTAGCAGCCCAAAGATTGGTAAAAGAGAAGGGTCAGAATGAGCCCGTGCC

Fln Alignment:

GG46A6U02H9UE6___HFLGMPECNVNLAQCVAYLSLAPKSVAVYQGIVAAQRLVKEKGQNEPV
B8LS10_______________HFLGMPECNVNLAQCVAYLSLAPKSVAVYQGIVAAQRMVKEKGQNEPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain