SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71998

Length: 229 nt

UniGene Fasta

>sp_v3.0_unigene71998
ATGACATGTTGGCTGAGATGTCCTGAAGTTACAGAAACTGAATCGTGTTCCAGATGCTCATGTACCTGTTATGAAATTTAAGTTCAGAGGGATATCTATTGATTTGCTTTATGCTAGCATTTGCTCTCCGTATTGTTCCTGATGTAAGTGAAATTAATCAAGTAGTCAGGTTTATATCTTGTACGATATACTATAACATTGCCAGTGTTTGAGCATCTGGTGATGGATA

Ace file of the UniGene sp_v3.0_unigene71998

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[A] COG5186 Poly(A) polymerase	-	-	0.0001	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	Gene names
Sma3	GSVIVT00034292001; OSJNBa0090E14.29; OsI_23369; OsJ_21686; POPTRDRAFT_260254; RCOM_0801640; VITISV_011285;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	polynucleotide adenylyltransferase activity	GO:0004652	Molecular Function	-
Sma3		GO:0006350	Biological Process	-
Sma3	RNA polyadenylation	GO:0043631	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Poly(A) polymerase, RNA-binding domain	IPR007010	-	-
Sma3	Poly(A) polymerase, central domain	IPR007012	-	-
Sma3	Poly(A) polymerase	IPR014492	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ25

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 491 aas, your sequence is shorter than subject: 47 - 701

Fln protein: *HVG*DVLKLQKLNRVPDAHVPVMKFKFRGISIDLLYASICSPYCS*

Protein Length: 48

Fln nts: ATGACATGTTGGCTGAGATGTCCTGAAGTTACAGAAACTGAATCGTGTTCCAGATGCTCATGTACCTGTTATGAAATTTAAGTTCAGAGGGATATCTATTGATTTGCTTTATGCTAGCATTTGCTCTCCGTATTGTTCCTGATGTAAGTGAAATTAATCAAGTAGTCAGGTTTATATCTTGTACGATATACTATAACATTGCCAGTGTTTGAGCATCTGGTGATGGATA

Fln Alignment:

GG46A6U02HA9YI___KLQKLNRVPDAHVPVMKFKFRGISIDLLYASI
C0PQ25_______________EVMELNRVPDAHVPVMKFKFRGISIDLLYASV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain