SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71884

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene71884
CGTCGTGACCTTGGCTGTCACTCATTTGGGATGCAGCTGAGATTTTTGAAGAGGCAAGAAGTATTGCAGAGGAAGTTTGTGGCCCCCATCATCCTGATACTCTGGATATTATCAGCAACCTAGCAGGAGCATATGATGCAATGGGAAGGTAGTGTTACTTATGGTCCATGGAGATGGACAGATAGATGAATTGATTGTCATCTTTAGTAGTACATAATTCTTAGTATAGCTTATGATGTATAGCCA

Ace file of the UniGene sp_v3.0_unigene71884

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinesin light chain, putative n=1 Tax=Ricinus communis RepID=B9RB32_RICCO	-	-	4.0e-10	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Kinesin light chain, putative	-	-	7.729e-08	-

Source	Gene names
Sma3	49D11.11; At3g27960; GSVIVT00008638001; GSVIVT00016095001; GSVIVT00020740001; MA4_54N07.30; MBP_91N22.84; OSJNBb0060O16.28; Os02g0708400; OsI_08639; OsJ_08096; POPTRDRAFT_1084820; POPTRDRAFT_252050; RCOM_0850540; RCOM_1510760; VITISV_021292;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G27960.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:10380513-10382593 REVERSE LENGTH=663	4.0e-13	67%
RefSeq	Arabidopsis thaliana	NP_189435.1	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	6.0e-13	67%
RefSeq	Populus trichocarpa	XP_002321593.1	predicted protein, partial [Populus trichocarpa]	3.0e-13	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKE5

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 36 aas, your sequence is shorter than subject: 50 - 824

Fln protein: S*PWLSLIWDAAEIFEEARSIAEEVCGPHHPDTLDIISNLAGAYDAMGR*

Protein Length: 51

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGGGATGCAGCTGAGATTTTTGAAGAGGCAAGAAGTATTGCAGAGGAAGTTTGTGGCCCCCATCATCCTGATACTCTGGATATTATCAGCAACCTAGCAGGAGCATATGATGCAATGGGAAGGTAGTGTTACTTATGGTCCATGGAGATGGACAGATAGATGAATTGATTGTCATCTTTAGTAGTACATAATTCTTAGTATAGCTTATGATGTATAGCCA

Fln Alignment:

GG46A6U02IK17L___DAAEIFEEARSIAEEVCGPHHPDTLDIISNLAGAYDAMGR
B8LKE5_______________EAADLFEEARSILEEVSGQYHPDTLAVYSNLAGTYDAMGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain