SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71861

Length: 295 nt

UniGene Fasta

>sp_v3.0_unigene71861
CGTCGTGACCTTGGCTGTCACTCAAAATCTTGCTTGCTTTGTCACCAGAGGATGTGTTGCCTGCTATATACCTCTGTACTAATCGGATTGCCCCTGATTATGAGAATGTGGATCTAAATCTAGGTGGTAGCACAGTGTTAGCGGCAATTGAAGATTCTTTTGGGACACAAAAAGCTAAGCTGAGAGAAATGTACAACAGCAAGGGTGACCTTGGTGACGTGGCTCAAGCATGTCGACAAACACAATCCTTGCTCACAATTCCACGTCCTCTCATAATTCGTCAAGTTTTCAGTGC

Ace file of the UniGene sp_v3.0_unigene71861

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA ligase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TSX4_VITVI	-	-	2.0e-28	67%
FL-Next	Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1	-	-	0.0	38%

Source	Gene names
Sma3	At1g66730; F4N21_14; GSVIVT00006291001; OsJ_03041;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA ligase (ATP) activity	GO:0003910	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	DNA recombination	GO:0006310	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA ligase, ATP-dependent	IPR000977	-	-
Sma3	DNA repair metallo-beta-lactamase	IPR011084	-	-
Sma3	DNA ligase, ATP-dependent, N-terminal	IPR012308	-	-
Sma3	DNA ligase, ATP-dependent, C-terminal	IPR012309	-	-
Sma3	DNA ligase, ATP-dependent, central	IPR012310	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G66730.1	AtLIG6, LIG6 DNA LIGASE 6 chr1:24884991-24891823 FORWARD LENGTH=1396	2.0e-33	63%
RefSeq	Arabidopsis thaliana	NP_176845.2	DNA ligase 6 [Arabidopsis thaliana]	3.0e-33	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q42572-3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 495 aas, your sequence is shorter than subject: 97 - 731

Fln protein: S*PWLSLKILLALSPEDVLPAIYLCTNRIAPDYENVDLNLGGSTVLAAIEDSFGTQKAKLREMYNSKGDLGDVAQACRQTQSLLTIPRPLIIRQVFS

Protein Length: 98

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATCTTGCTTGCTTTGTCACCAGAGGATGTGTTGCCTGCTATATACCTCTGTACTAATCGGATTGCCCCTGATTATGAGAATGTGGATCTAAATCTAGGTGGTAGCACAGTGTTAGCGGCAATTGAAGATTCTTTTGGGACACAAAAAGCTAAGCTGAGAGAAATGTACAACAGCAAGGGTGACCTTGGTGACGTGGCTCAAGCATGTCGACAAACACAATCCTTGCTCACAATTCCACGTCCTCTCATAATTCGTCAAGTTTTCAGTGC

Fln Alignment:

GG46A6U02HNS8Z___LKILLALSPEDVLPAIYLCTNRIAPDYENVDLNLGGSTVLAAIEDSFGTQKAKLREMYNSKGDLGDVAQACRQTQSLLTIPRPLIIRQVF
Q42572-3_____________LRTVIATTPEDLVATVYLSANEIAPAHEGVELGIGESTIIKAISEAFGRTEDHVKKQNTELGDLGLVAKGSRSTQTMMFKPEPLTVVKVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain