SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71726

Length: 201 nt

UniGene Fasta

>sp_v3.0_unigene71726
CGTCGTGACCTTGGCTGTCACTCAGAATTCAAAATCACTGTCGAAGAAGAAATGTCTGGGAACATTACAACTGTTCAGGAAGCAGCCGATTTGATAGAAAGGCTTGCCGGGGTGGAAGGTTCTGCAGCTGAGGCAGTTAAATCTTGAGCGGTGTATGCGTGTTACCTAAAGGCTATCCAAGTGCACATCTAACGTCATCTG

Ace file of the UniGene sp_v3.0_unigene71726

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Acyl carrier protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%

Source	GOs	Term	Type	Identity
Sma3	acyl carrier activity	GO:0000036	Molecular Function	-
Sma3	phosphopantetheine binding	GO:0031177	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Acyl carrier protein (ACP)	IPR003231	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Phosphopantetheine-binding	IPR006163	-	-
Sma3	Acyl carrier protein-like	IPR009081	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKY4

Fln msg: your sequence is shorter than subject: 49 - 151

Fln protein: RRDLGCHSEFKITVEEEMSGNITTVQEAADLIERLAGVEGSAAEAVKS*

Protein Length: 50

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAATTCAAAATCACTGTCGAAGAAGAAATGTCTGGGAACATTACAACTGTTCAGGAAGCAGCCGATTTGATAGAAAGGCTTGCCGGGGTGGAAGGTTCTGCAGCTGAGGCAGTTAAATCTTGA___GCGGTGTATGCGTGTTACCTAAAGGCTATCCAAGTGCACATCTAACGTCATCTG

Fln Alignment:

GG46A6U02H0WXM___LGCHSEFKITVEEEMSGNITTVQEAADLIERLAGVEGSAAEAVKS
A9NKY4_______________MALEEEFKISVEEENAGNITTVQEAADLIERLAGVEGSAGQAVKS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain