SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71672

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene71672
CGTCGTGACCTTGGCTGTCACTCAAGGCTTTGCACCCCTAACGAAATTTTTCTGTTCCAATGGCAAATGAGAGGGAGGAATACAATTTCTGCACTCACACTGAGAAGTTGGCCATTGCATTTGCACTTATCAACACGGATCCAGGAACATCTATCTGGATCACCAAGAACCTTCGTATGTGTAGTGATTGCCACATTACTGCCAAGTCCATATCCAAGATTGTGGGACGAGAAA

Ace file of the UniGene sp_v3.0_unigene71672

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RIP1_RICCO	-	-	2.0e-13	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Pentatricopeptide repeat protein	-	-	7.085e-39	-

Source	Gene names
Sma3	At1g15510; GSVIVT00006467001; GSVIVT00020655001; GSVIVT00024670001; GSVIVT00025891001; GSVIVT00026082001; GSVIVT00026498001; GSVIVT00032631001; GSVIVT00034388001; GSVIVT00034531001; LOC_Os03g13830; MtrDRAFT_AC149489g1v2; Os03g0241800; Os06g0112000; OsI_10

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	0.0	-
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G57430.1	OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein chr3:21255731-21258403 REVERSE LENGTH=890	7.0e-16	58%
RefSeq	Arabidopsis thaliana	NP_191302.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	9.0e-16	58%
RefSeq	Populus trichocarpa	XP_002299387.1	predicted protein [Populus trichocarpa]	3.0e-15	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAH8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 23 aas, your sequence is shorter than subject: 77 - 210

Fln protein: S*PWLSLKALHP*RNFSVPMANEREEYNFCTHTEKLAIAFALINTDPGTSIWITKNLRMCSDCHITAKSISKIVGRE

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGCTTTGCACCCCTAACGAAATTTTTCTGTTCCAATGGCAAATGAGAGGGAGGAATACAATTTCTGCACTCACACTGAGAAGTTGGCCATTGCATTTGCACTTATCAACACGGATCCAGGAACATCTATCTGGATCACCAAGAACCTTCGTATGTGTAGTGATTGCCACATTACTGCCAAGTCCATATCCAAGATTGTGGGACGAGAAA

Fln Alignment:

GG46A6U02FPGCE___P*RNFSV-PMANEREEYNFCTHTEKLAIAFALINTDPGTSIWITKNLRMCSDCHITAKSISKIVGRE
D5AAH8_______________PNTNFALHDVDDEQKERTLYHHSEKLAIAFALISTPHGTSIQINKNLRVCVDCHTATKFISKIAGRE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain