SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene71380

Length: 233 nt

UniGene Fasta

>sp_v3.0_unigene71380
CGTCGTGACCTTGGCTGTCACTCATTGTTTTGCTTGTTGTCTTGAAGGAAGGTTATATGTCATGGGTGGACGTTCAAGCTTCACCATAGGACATTCAAGGTGTATTGATGTTTATGATCCTGAAATCCATACTTGGAAAGAAATGAAAAATGGGTGTGTTATGGTTGTTGCTCATGCTGTTCTGGACAAGAAGCTTTTTCNGTATAGAATGGAAGAATGAAAGGAAGTTGGCA

Ace file of the UniGene sp_v3.0_unigene71380

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein AFR, putative n=1 Tax=Ricinus communis RepID=B9RMG2_RICCO	-	-	5.0e-22	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	Gene names
Sma3	GSVIVT00002843001; OJ1003_F04.33; OSJNBb0089B03.12; Os02g0504900; Os04g0380300; OsI_07338; OsI_15607; OsJ_06846; OsJ_14521; POPTRDRAFT_1085553; POPTRDRAFT_565879; POPTRDRAFT_592319; RCOM_1080740; VITISV_018334;

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67480.1	Galactose oxidase/kelch repeat superfamily protein chr1:25277294-25278529 FORWARD LENGTH=376	2.0e-16	55%
RefSeq	Arabidopsis thaliana	NP_176915.1	F-box/kelch-repeat protein [Arabidopsis thaliana]	3.0e-16	55%
RefSeq	Populus trichocarpa	XP_002311715.1	f-box family protein [Populus trichocarpa]	5.0e-26	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX50

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 78 aas, your sequence is shorter than subject: 73 - 386

Fln protein: VVTLAVTHCFACCLEGRLYVMGGRSSFTIGHSRCIDVYDPEIHTWKEMKNGCVMVVAHAVLDKKLFQYRMEE*

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTTTGCTTGTTGTCTTGAAGGAAGGTTATATGTCATGGGTGGACGTTCAAGCTTCACCATAGGACATTCAAGGTGTATTGATGTTTATGATCCTGAAATCCATACTTGGAAAGAAATGAAAAATGGGTGTGTTATGGTTGTTGCTCATGCTGTTCTGGACAAGAAGCTTTTTCaGTATAGAATGGAAGAATGAAAGGAAGTTGGCA

Fln Alignment:

GG46A6U02JD56G___CFACCLEGRLYVMGGRSSFTIGHSRCIDVYDPEIHTWKEMKNGCVMVVAHAVLDKKLF
A9NX50_______________CFACGLEGRLYVMGGRSSFTIGHSRCIDVYDPEIHTWAEMKNGCVMAVAHAVLDKKLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain