SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70995

Length: 302 nt

UniGene Fasta

>sp_v3.0_unigene70995
CGTCGTGACCTTGGCTGTCACTCATTTGTGGCATGGTGGTTCCAATTATGATGCTTGGTGTAATGCTGTTTCTGGTCAGGTTGGCCAGGTGATCCTCTCCATGCCTTATTCCTACTCCCAGATGGGCTTCGGATTGGGAATTTTCTTCCATTTGTTGTATTCTGTTGTAGGTATCTGGACTTGCTACATGCTTTCATGCCTCTATTTGGAGTACCGAGCTCGGAAGGCAAAAGAAGGTGTCCACTTCAAGAAGCATGTTATCCAGTACCACGAGGTCATGGGCTACTTGGTTGCACCTTGGC

Ace file of the UniGene sp_v3.0_unigene70995

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	auxin influx protein [Populus tomentosa]	-	-	2.0e-25	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Auxin influx carrier component	-	-	1.611e-29	-

Source	Gene names
Sma3	AIC1; AIC2; AIC3; AUX; AUX1; At1g77690; At2g21050; At2g38120; At5g01240; CS-AUX1; F16M14.5; F26H11.19; F7J8_220; GSVIVT00015336001; GSVIVT00021482001; GSVIVT00029256001; GSVIVT00036093001; LAX1; LAX2; LAX3; LAX4; LAX5; LOC_Os01g63770; LOC_Os03g14080; LOC_

Source	GOs	Term	Type	Identity
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	auxin influx transmembrane transporter activity	GO:0010328	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	establishment of planar polarity	GO:0001736	Biological Process	-
Sma3	amino acid transport	GO:0006865	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-
Sma3	positive gravitropism	GO:0009958	Biological Process	-
Sma3	lateral root formation	GO:0010311	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-
Sma3	root hair cell differentiation	GO:0048765	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Tachykinin/Neurokinin-like, conserved site	IPR013055	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	WIYLD domain	IPR018848	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G21050.1	LAX2 like AUXIN RESISTANT 2 chr2:9034289-9036439 FORWARD LENGTH=483	4.0e-30	54%
RefSeq	Arabidopsis thaliana	NP_179701.1	auxin transporter-like protein 2 [Arabidopsis thaliana]	5.0e-30	54%
RefSeq	Populus trichocarpa	XP_002322969.1	auxin influx carrier component [Populus trichocarpa]	2.0e-32	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKH8

Fln msg: Distance to subject end: 336 aas, your sequence is shorter than subject: 100 - 480

Fln protein: VVTLAVTHLWHGGSNYDAWCNAVSGQVGQVILSMPYSYSQMGFGLGIFFHLLYSVVGIWTCYMLSCLYLEYRARKAKEGVHFKKHVIQYHEVMGYLVAPW

Protein Length: 101

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGTGGCATGGTGGTTCCAATTATGATGCTTGGTGTAATGCTGTTTCTGGTCAGGTTGGCCAGGTGATCCTCTCCATGCCTTATTCCTACTCCCAGATGGGCTTCGGATTGGGAATTTTCTTCCATTTGTTGTATTCTGTTGTAGGTATCTGGACTTGCTACATGCTTTCATGCCTCTATTTGGAGTACCGAGCTCGGAAGGCAAAAGAAGGTGTCCACTTCAAGAAGCATGTTATCCAGTACCACGAGGTCATGGGCTACTTGGTTGCACCTTGGC

Fln Alignment:

GG46A6U02JC9GG___LWHGGSNYDAWCNAVSGQVGQVILSMPYSYSQMGFGLGIFFHLLYSVVGIWTCYMLSCLYLEYRARKAKEGVHFKKHVIQYHEVMGYLVAPW
B8LKH8_______________LWHGGSRYDAWFNAVSGQVGQVILSMPYSYSQMGFGLGIFFHLLYAGVGIWTCYMLSCLYLEYRSRKEREGADFKRHVIQYHEVMGYLVGSW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain