SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70919

Length: 197 nt

UniGene Fasta

>sp_v3.0_unigene70919
CGTCGTGACCTTGGCTGTCACTCAATTCAATGGCAAATCCACCAAAACTGCACGGTCACAAGGAAGGAAGTTTCAAGTTTCCATAATGCAAGAGACAACTCGGCTTCTGGGTAATTTAGGATGGGCGTATATGCAACAGCATGACTATTGTTCTGCAGAAATCGTTTACAGGAAAGCACAGGCATTGGAGCCAGATG

Ace file of the UniGene sp_v3.0_unigene70919

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Chromosome undetermined scaffold_114, whole genome shotgun sequence	-	-	1.097e-08	-

Source	Gene names
Sma3	At1g04770; At3g51280; At5g48850; At5g48850/K24G6_19; F13M7.24; F24M12.320; GSVIVT00001269001; GSVIVT00001273001; GSVIVT00001275001; GSVIVT00002435001; GSVIVT00029794001; GSVIVT00036748001; GSVIVT00036751001; LOC_Os03g06970; OJ1123_F01.11; Os03g0165900; Os

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G48850.1	ATSDI1 Tetratricopeptide repeat (TPR)-like superfamily protein chr5:19805576-19807699 REVERSE LENGTH=306	6.0e-24	75%
RefSeq	Arabidopsis thaliana	NP_199696.2	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	8.0e-24	75%
RefSeq	Populus trichocarpa	XP_002303823.1	predicted protein [Populus trichocarpa]	7.0e-25	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P294

Fln msg: Distance to subject end: 125 aas, your sequence is shorter than subject: 65 - 248

Fln protein: VVTLAVTQFNGKSTKTARSQGRKFQVSIMQETTRLLGNLGWAYMQQHDYCSAEIVYRKAQALEPD

Protein Length: 66

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCAATGGCAAATCCACCAAAACTGCACGGTCACAAGGAAGGAAGTTTCAAGTTTCCATAATGCAAGAGACAACTCGGCTTCTGGGTAATTTAGGATGGGCGTATATGCAACAGCATGACTATTGTTCTGCAGAAATCGTTTACAGGAAAGCACAGGCATTGGAGCCAGATG

Fln Alignment:

GG46A6U02JYOZG___FNGKSTKTARSQGRKFQVSIMQETTRLLGNLGWAYMQQHDYCSAEIVYRKAQALEPD
A9P294_______________FNGKSTKTARSHGRKFQVSIKKETTRLLGNLGLAFMQQHDYCYAEIVYRKAQVLEPD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain