SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70840

Length: 329 nt

UniGene Fasta

>sp_v3.0_unigene70840
CGTCGTGACCTTGGCTGTCACTCAAGTGTGAGAGCATGCAGGTAGTAGAGAGCAAGCTTGTTGAGATGAATGTCAAATTTATAAAACGCACCGTAGAGGAAGGAGGAGTTTACGTTGATCAACTCTTCTTCCATGACCCAGATGACTTCATGATTGAGATTTGCAATTGCGAGAATTTACCAGTTGTGTATTTGGGTTGTGCAGGATCTGCTTGCCCTCTCAACTGCCAATCCAATGTTTCTTCAAATAATGCAGTACTCCAGCAGCAGCAGCAGAGATCCATATCATGTGCACCAGCTGCTACCATGTCTCCTCAAATGCTCCGAGTT

Ace file of the UniGene sp_v3.0_unigene70840

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana] gb\|AEE36365.1\| lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana]	-	-	3.0e-17	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Lactoylglutathione lyase	-	-	4.535e-15	-

Source	Gene names
Sma3	AT1G15380; AT1G80160; At1g15380; At1g80160; F18B13.24; F9L1.33; OSJNBa0089K24.11; Os01g0173600; Os05g0171900; OsI_00595; OsI_18636; OsJ_00566; OsJ_17296; P0685E10.15; POPTRDRAFT_562230; POPTRDRAFT_640628; RCOM_0898830;

Source	GOs	Term	Type	e value	Identity
Sma3	lyase activity	GO:0016829	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein chr1:30151101-30151930 FORWARD LENGTH=167	2.0e-23	63%
RefSeq	Arabidopsis thaliana	NP_001077851.1	lactoylglutathione lyase / glyoxalase I-like protein [Arabidopsis thaliana]	2.0e-23	63%
RefSeq	Populus trichocarpa	XP_002298106.1	predicted protein [Populus trichocarpa]	4.0e-23	51%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1X4

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 109 - 197

Fln protein: S*PWLSLKCESMQVVESKLVEMNVKFIKRTVEEGGVYVDQLFFHDPDDFMIEICNCENLPVVYLGCAGSACPLNCQSNVSSNNAVLQQQQQRSISCAPAATMSPQMLRV

Protein Length: 110

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTGTGAGAGCATGCAGGTAGTAGAGAGCAAGCTTGTTGAGATGAATGTCAAATTTATAAAACGCACCGTAGAGGAAGGAGGAGTTTACGTTGATCAACTCTTCTTCCATGACCCAGATGACTTCATGATTGAGATTTGCAATTGCGAGAATTTACCAGTTGTGTATTTGGGTTGTGCAGGATCTGCTTGCCCTCTCAACTGCCAATCCAATGTTTCTTCAAATAATGCAGTACTCCAGCAGCAGCAGCAGAGATCCATATCATGTGCACCAGCTGCTACCATGTCTCCTCAAATGCTCCGAGTT

Fln Alignment:

GG46A6U02J1LTM___LSLKCESMQVVESKLVEMNVKFIKRTVEEGGVYVDQLFFHDPDDFMIEICNCENLPVVYLGCAGSACPLNCQSNVSSNNAVLQQQQQRSISCAPAATMSPQMLRV
A9P1X4_______________MSFQCESMQVVESKLVEMNIKFVKRTVEEGGISVDQLFFHDPDDFMIEICNCDNLPVEYLGSAGSACPLNCHSNASSTNAAL-QQQQISASCASAATISHQMLRV

SSRs (tot: 1)

Start position	End position	Sequence	Length
261	275	CAG CAG CAG CAG CAG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain