SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70728

Length: 132 nt

UniGene Fasta

>sp_v3.0_unigene70728
CGTCGTGACCTTGGCTGTCACTCAAGATTTCTTGCAGGAAGTTACTTCGAAAAAAGATCAGCAGCAATACTGGGCACTGAGAGAGCCGTATAGATATATATCCGTCAAGGAATTTGCTGAGGCATTTCAATC

Ace file of the UniGene sp_v3.0_unigene70728

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter G family member 40 [Arabidopsis thaliana] sp\|Q9M9E1.1\|AB40G_ARATH RecName: Full=ABC transporter G family member 40; Short=ABC transporter ABCG.40; Short=AtABCG40; AltName: Full=Pleiotropic drug resistance protein 12 gb\|AAF71978.1\|AC013453_	-	-	1.0e-08	83%
FL-Next	sp=ABC transporter G family member 40; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	83%
Sma3	ATP-binding cassette transporter, putative	-	-	2.119e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	6.89e-23	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	3.638e-09	-

Source	Gene names
Sma3	ABC; ABC1; At1g15520; B1090H08.39; GSVIVT00016813001; GSVIVT00022041001; GSVIVT00022062001; GSVIVT00022064001; GSVIVT00022065001; GSVIVT00032575001; GSVIVT00032578001; GSVIVT00032581001; GSVIVT00034307001; GSVIVT00034310001; GSVIVT00034318001; GSVIVT00034

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15520.1	PDR12, ATPDR12, ABCG40, ATABCG40 pleiotropic drug resistance 12 chr1:5331993-5338175 REVERSE LENGTH=1423	1.0e-12	83%
RefSeq	Arabidopsis thaliana	NP_173005.1	ABC transporter G family member 40 [Arabidopsis thaliana]	1.0e-12	83%
RefSeq	Populus trichocarpa	XP_002304713.1	pleiotropic drug resistance protein [Populus trichocarpa]	5.0e-12	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M9E1

Fln msg: Distance to subject end: 954 aas, your sequence is shorter than subject: 43 - 1423

Fln protein: VVTLAVTQDFLQEVTSKKDQQQYWALREPYRYISVKEFAEAFQ

Protein Length: 44

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATTTCTTGCAGGAAGTTACTTCGAAAAAAGATCAGCAGCAATACTGGGCACTGAGAGAGCCGTATAGATATATATCCGTCAAGGAATTTGCTGAGGCATTTCAATC

Fln Alignment:

GG46A6U02JZZOU___DFLQEVTSKKDQQQYWALR-EPYRYISVKEFAEAFQ
Q9M9E1_______________DFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain