SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70302

Length: 339 nt

UniGene Fasta

>sp_v3.0_unigene70302
CGTCGTGACCTTGGCTGTCACTCAACTTTTGTGCGGAAAGGCACTCGGGTGACTTACCACCCCTATGGCATGGGTCGGATAGGAACCATCTGGGGCGCCGACTGCCTCCAATTCAAGCCCGAGAGATGGCTCAACGACGAAGGCGATTTTGTTCCGCAGAGTCCGTTCAAGTTTGCAGTTTTTCAAGGCGGAATGCGCCTCTGTCTGGGTAAGGACATGGCCTTTATCCAGATGAAATACGTCGCGGCAAACCTAATTTCCATGTTCAGGTTGCGGCGCCCTGTTGGTTCGACAGCCAGAATTCCGAAGCTCGTTCACAGATTGACTTCGCACATGGAA

Ace file of the UniGene sp_v3.0_unigene70302

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450 n=1 Tax=Panax notoginseng RepID=F4YF73_9APIA	-	-	4.0e-26	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Cytochrome P450, putative	-	-	1.46e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Unspecific monooxygenase.	EC:1.14.14.1	-	1.872e-18	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid metabolism	00071	1.872e-18	%
Sma3	Steroid hormone biosynthesis	00140	1.872e-18	%
Sma3	Caffeine metabolism	00232	1.872e-18	%
Sma3	Tryptophan metabolism	00380	1.872e-18	%
Sma3	Arachidonic acid metabolism	00590	1.872e-18	%
Sma3	Linoleic acid metabolism	00591	1.872e-18	%
Sma3	Aminobenzoate degradation	00627	1.872e-18	%
Sma3	Retinol metabolism	00830	1.872e-18	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980	1.872e-18	%
Sma3	Drug metabolism - cytochrome P450	00982	1.872e-18	%
Sma3	Drug metabolism - other enzymes	00983	1.872e-18	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.872e-18	%
Sma3	Metabolic pathways	01100	1.872e-18	%

Source	Gene names
Sma3	At1g69500; At1g69500/F10D13_15; At2g45510; At5g08250; CYP704A10; CYP704A11; CYP86A20; CYP86A24; CYP94A5; CYP94B7; CYP94C5; CYP94C7; CYP94C9; CYP94D23v1; CYP94D23v2; F10D13_15; GSVIVT00021650001; GSVIVT00022036001; GSVIVT00023301001; GSVIVT00024147001; GSV

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G27690.1	CYP94C1 cytochrome P450, family 94, subfamily C, polypeptide 1 chr2:11809373-11810860 FORWARD LENGTH=495	9.0e-29	47%
RefSeq	Arabidopsis thaliana	NP_180337.1	cytochrome P450, family 94, subfamily C, polypeptide 1 [Arabidopsis thaliana]	1.0e-28	47%
RefSeq	Populus trichocarpa	XP_002319770.1	cytochrome P450 [Populus trichocarpa]	1.0e-31	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A7Y6

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 113 - 559

Fln protein: RRDLGCHSTFVRKGTRVTYHPYGMGRIGTIWGADCLQFKPERWLNDEGDFVPQSPFKFAVFQGGMRLCLGKDMAFIQMKYVAANLISMFRLRRPVGSTARIPKLVHRLTSHME

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTTGTGCGGAAAGGCACTCGGGTGACTTACCACCCCTATGGCATGGGTCGGATAGGAACCATCTGGGGCGCCGACTGCCTCCAATTCAAGCCCGAGAGATGGCTCAACGACGAAGGCGATTTTGTTCCGCAGAGTCCGTTCAAGTTTGCAGTTTTTCAAGGCGGAATGCGCCTCTGTCTGGGTAAGGACATGGCCTTTATCCAGATGAAATACGTCGCGGCAAACCTAATTTCCATGTTCAGGTTGCGGCGCCCTGTTGGTTCGACAGCCAGAATTCCGAAGCTCGTTCACAGATTGACTTCGCACATGGAA

Fln Alignment:

GG46A6U02IRL0L___TFVRKGTRVTYHPYGMGRIGTIWGADCLQFKPERWLNDEGDFVPQSPFKFAVFQGGMRLCLGKDMAFIQMKYVAANLISMFRLRRPVGSTARIPKLVHRLTSHME
D5A7Y6_______________TFVGKGTRVTYHPYAMGRMNAIWGADCLQFKPERWVNKDGHFVPQSPFKFAVFQGGVRVCLGKEMAFIEMKFVAATVISMFRLQPPVDSRQRTPKLVHCLTARME

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain