SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69971

Length: 360 nt

UniGene Fasta

>sp_v3.0_unigene69971
CGTCGTGACCTTGGCTGTCACTCATATGTGGGCAGCTTCAGAGAGGAAATGTTGTGGTTACAGGCAGGAAATTTGCTTTTGTTAGAATGCTGGAGGGCATTCAGTAGTACAAGATAACCCATTTGCCTTTAGTGCCATCCATTGTGATTACTGTTGCAAAGGAGAAAATTGTGGCACGATATGATCTGTGTTCTTTGAAGGAAGTTATCACTGGAGCAGCATCCTTGGGCAAAGATATCATGGAGGGATTTGCGAAAAGATTTTACAAGCTACAATGATTCAGGTGTATATCTATATCCATTTTCTCCTATGCATCATATGTGAAACGTAGGTTGTGGAATTGAATGTTGACCATACTTA

Ace file of the UniGene sp_v3.0_unigene69971

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana] sp\|Q9M0X9.1\|4CLL7_ARATH RecName: Full=4-coumarate--CoA ligase-like 7; AltName: Full=4-coumarate--CoA ligase isoform 6; Short=At4CL6 emb\|CAB81058.1\| 4-coumarate--CoA ligase-like protein [Arabidopsis tha	-	-	8.0e-11	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%

Source	Gene names
Sma3	PHYPADRAFT_113172; PHYPADRAFT_209184;

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G05160.1	AMP-dependent synthetase and ligase family protein chr4:2664451-2666547 FORWARD LENGTH=544	3.0e-14	45%
RefSeq	Arabidopsis thaliana	NP_192425.1	4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana]	4.0e-14	45%
RefSeq	Populus trichocarpa	XP_002329324.1	acyl:coa ligase [Populus trichocarpa]	1.0e-15	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNP4

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 181 aas, your sequence is shorter than subject: 92 - 540

Fln protein: S*PWLSLICGQLQRGNVVVTGRKFAFVRMLEGIQ*YKITHLPLVPSIVITVAKEKIVARYDLCSLKEVITGAASLGKDIMEGFAKRFYKLQ*

Protein Length: 93

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATGTGGGCAGCTTCAGAGAGGAAATGTTGTGGTTACAGGCAGGAAATTTGCTTTTGTTAGAATGCTGGAGGGCATTCAGTAGTACAAGATAACCCATTTGCCTTTAGTGCCATCCATTGTGATTACTGTTGCAAAGGAGAAAATTGTGGCACGATATGATCTGTGTTCTTTGAAGGAAGTTATCACTGGAGCAGCATCCTTGGGCAAAGATATCATGGAGGGATTTGCGAAAAGATTTTACAAGCTACAATGATTCAGGTGTATATCTATATCCATTTTCTCCTATGCATCATATGTGAAACGTAGGTTGTGGAATTGAATGTTGACCATACTTA

Fln Alignment:

GG46A6U02H7SGT___LICGQLQRGNVVVTGRKFAFVRMLEGIQ*YKITHLPLVPSIVITVAKEKIVARYDLCSLKEVITGAASLGKDIMEGFAKR
B8LNP4_______________IVYGQLQRGNAVVSMGKFTFVRMLEAIQEYKITHLPLVPPIVIAVAKENIVARYDLSSLKKVMSGAAPLGKDIMEECAKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain