SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69709

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene69709
CGTCGTGACCTTGGCTGTCACTCAATCTACGCTGCTACTCGTAGTTGGGATGATGTAGCAAGGTTGAGAGCAACAATGAAAGAAAAGGGTTTGAGAAAAACACCAGGTTGTAGCGTGATTGAGGTTAATAACAGGATTTATACATTCTTTGTGGGGGATCAAAGGCATCCTCAATCTGAGGAAATTTATAGAACGTTGGAAATGTTAGATAGGCAAATGAAGGCAGCAGGGTATGTGCC

Ace file of the UniGene sp_v3.0_unigene69709

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V1_PICAB	-	-	1.0e-15	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Pentatricopeptide repeat protein	-	-	1.032e-06	-

Source	Gene names
Sma3	GSVIVT00000680001; PPR;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49142.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:18215788-18217848 REVERSE LENGTH=686	1.0e-20	54%
RefSeq	Arabidopsis thaliana	NP_001190038.1	tetratricopeptide repeat-like family protein [Arabidopsis thaliana]	2.0e-20	54%
RefSeq	Populus trichocarpa	XP_002332237.1	predicted protein [Populus trichocarpa]	1.0e-20	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 89 aas, your sequence is shorter than subject: 79 - 246

Fln protein: RRDLGCHSIYAATRSWDDVARLRATMKEKGLRKTPGCSVIEVNNRIYTFFVGDQRHPQSEEIYRTLEMLDRQMKAAGYV

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTACGCTGCTACTCGTAGTTGGGATGATGTAGCAAGGTTGAGAGCAACAATGAAAGAAAAGGGTTTGAGAAAAACACCAGGTTGTAGCGTGATTGAGGTTAATAACAGGATTTATACATTCTTTGTGGGGGATCAAAGGCATCCTCAATCTGAGGAAATTTATAGAACGTTGGAAATGTTAGATAGGCAAATGAAGGCAGCAGGGTATGTGCC

Fln Alignment:

GG46A6U01C5SQM___SIYAATRSWDDVARLRATMKEKGLRKTPGCSVIEVNNRIYTFFVGDQRHPQSEEIYRTLEMLDRQMKAAGYV
D5AAE0_______________NIYAAAGRWDDVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain