SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69646

Length: 229 nt

UniGene Fasta

>sp_v3.0_unigene69646
CGTCGTGACCTTGGCTGTCACTCATTTTGGCTGGAGAGCTGTCTCTCATGTCTGCATTGGCTGCAAGCGAGCCTGTCAAGAGCCATATGAAGTACAATAGATCAAACAAGGATATCAAAGCAACCAGTACCCCATAAAGTTAGCATGCATTTTCTCAATAGTTCCCATCCCCTCATGTGGTAGATATGTATGAATGTTCCTAAAGCAACCAGGTAGAATTCAAATGGGA

Ace file of the UniGene sp_v3.0_unigene69646

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	3-hydroxy-3-methylglutaryl coenzyme A reductase n=1 Tax=Taxus x media RepID=Q6WP38_9CONI	-	-	6.0e-07	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	3-hydroxy-3-methylglutaryl-coenzyme A reductase	-	-	8.716e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydroxymethylglutaryl-CoA reductase (NADPH).	EC:1.1.1.34	-	2.044e-16	-

Source	KEGGs	Term	e value	Identity
Sma3	Terpenoid backbone biosynthesis	00900	2.044e-16	%
Sma3	Biosynthesis of terpenoids and steroids	01062	2.044e-16	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	2.044e-16	%
Sma3	Biosynthesis of plant hormones	01070	2.044e-16	%
Sma3	Metabolic pathways	01100	2.044e-16	%
Sma3	Biosynthesis of secondary metabolites	01110	2.044e-16	%

Source	Gene names
Sma3	GSVIVT00036301001; HMG1; HMG2; HMGR; HMGR1; HMGR2; VITISV_039086; hmgr;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	mitochondrial membrane	GO:0031966	Cellular Component	-
Sma3	plastid membrane	GO:0042170	Cellular Component	-
Sma3	hydroxymethylglutaryl-CoA reductase (NADPH) activity	GO:0004420	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	isoprenoid biosynthetic process	GO:0008299	Biological Process	-
Sma3	coenzyme A metabolic process	GO:0015936	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	0.0	-
Sma3	Hydroxymethylglutaryl-CoA reductase, eukaryotic/arcaheal type	IPR004554	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAJ6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 45 - 305

Fln protein: S*PWLSLILAGELSLMSALAASEPVKSHMKYNRSNKDIKATSTP*

Protein Length: 46

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGGCTGGAGAGCTGTCTCTCATGTCTGCATTGGCTGCAAGCGAGCCTGTCAAGAGCCATATGAAGTACAATAGATCAAACAAGGATATCAAAGCAACCAGTACCCCATAA___AGTTAGCATGCATTTTCTCAATAGTTCCCATCCCCTCATGTGGTAGATATGTATGAATGTTCCTAAAGCAACCAGGTAGAATTCAAATGGGA

Fln Alignment:

GG46A6U01C5CMU___ILAGELSLMSALAASEPVKSHMKYNRSNKDIKATS
D5AAJ6_______________VLAGELSLMSALAAGQLVKSHMKYNRSNKDMKANS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain