SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69632

Length: 169 nt

UniGene Fasta

>sp_v3.0_unigene69632
CGTCGTGACCTTGGCTGTCACTCATTCTTGGTTTACATGTTGTTCAACTTAGCTCTGGTGTTTTCTTCGGTGTTCATTGTGACACATTTTGCACCTGCAGCAGCAGGCTCTGGCATCCCTGAAATTAAGGGCTACTTGAATGGTATTGATACACCTGGAATTCTTCTGT

Ace file of the UniGene sp_v3.0_unigene69632

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cl-channel clc-7 (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HV75_POPTR	-	-	7.0e-16	83%
FL-Next	sp=Chloride channel protein CLC-d; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	79%
Sma3	Putative CLC-d chloride channel protein	-	-	2.258e-09	-

Source	Gene names
Sma3	At5g26240; At5g26240/T19G15_90; CLC-D; F9D12.10; GSVIVT00019950001; LOC_Os03g48940; OSJNBb0021P10.4; OsI_13133; OsJ_12209; PHYPADRAFT_151168; PHYPADRAFT_189798; POPTRDRAFT_231287; RCOM_0914010; T19G15.90;

Source	GOs	Term	Type	Identity
Sma3	trans-Golgi network	GO:0005802	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	voltage-gated chloride channel activity	GO:0005247	Molecular Function	-
Sma3	chloride ion binding	GO:0031404	Molecular Function	-
Sma3	chloride transport	GO:0006821	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Chloride channel, voltage gated	IPR001807	-	-
Sma3	Chloride channel ClC-plant	IPR002251	-	-
Sma3	Chloride channel, core	IPR014743	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G26240.1	CLC-D, ATCLC-D chloride channel D chr5:9189622-9194347 FORWARD LENGTH=792	2.0e-19	79%
RefSeq	Arabidopsis thaliana	NP_197996.1	chloride channel protein CLC-d [Arabidopsis thaliana]	2.0e-19	79%
RefSeq	Populus trichocarpa	XP_002315783.1	Cl-channel clc-7, partial [Populus trichocarpa]	4.0e-21	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P92943

Fln msg: Distance to subject end: 624 aas, your sequence is shorter than subject: 56 - 792

Fln protein: RRDLGCHSFLVYMLFNLALVFSSVFIVTHFAPAAAGSGIPEIKGYLNGIDTPGILL

Protein Length: 57

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTGGTTTACATGTTGTTCAACTTAGCTCTGGTGTTTTCTTCGGTGTTCATTGTGACACATTTTGCACCTGCAGCAGCAGGCTCTGGCATCCCTGAAATTAAGGGCTACTTGAATGGTATTGATACACCTGGAATTCTTCTGT

Fln Alignment:

GG46A6U01BFEMN___FLVYMLFNLALVFSSVFIVTHFAPAAAGSGIPEIKGYLNGIDTPGILL
P92943_______________FIVYLLINLVLVFSSAYIITQFAPAAAGSGIPEIKGYLNGIDIPGTLL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain