SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69573

Length: 183 nt

UniGene Fasta

>sp_v3.0_unigene69573
CGTCGTGACCTTGGCTGTCACTCAATCCGTGCCTTTCATACTGATGATTACATACATTTCTTGAGTAGTGTAGCACCAGACACTCAGCAGGAGCAGCTGAGGCAGTTGAAGAGGTTCAATGTGGGGGAGGACTGCCCTGTGTTTGATGGGCTTTTCAATTTTTGCCAGTCTTCTGCAGGAGGC

Ace file of the UniGene sp_v3.0_unigene69573

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone deacetylase n=2 Tax=Populus trichocarpa RepID=B9MZ37_POPTR	-	-	4.0e-17	76%
FL-Next	sp=Histone deacetylase 19; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	74%
Sma3	Histone deacetylase	-	-	4.747e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone deacetylase.	EC:3.5.1.98	-	1.161e-06	-

Source	Gene names
Sma3	AT5G63110; At4g38130; B1307A11.3-1; B1307A11.3-3; F20D10.250; GSVIVT00016005001; GSVIVT00022343001; GSVIVT00036316001; HD1; HDA1; HDA108; HDA1504; HDA1505; HDA19; HDA902; HDA903; HDA908; HDA909; Hda2; Hdeac1; MICPUCDRAFT_31447; MICPUN_79903; OJ1006_D05.31

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	histone deacetylase activity	GO:0004407	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	basal transcription repressor activity	GO:0017163	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	histone acetylation	GO:0016573	Biological Process	-
Sma3	histone deacetylation	GO:0016575	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Histone deacetylase superfamily	IPR000286	-	0.0	-
Sma3	Histone deacetylase	IPR003084	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G38130.1	HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 histone deacetylase 1 chr4:17896493-17899057 REVERSE LENGTH=501	1.0e-22	74%
RefSeq	Arabidopsis thaliana	NP_001078511.1	histone deacetylase 1/2 [Arabidopsis thaliana]	1.0e-22	74%
RefSeq	Populus trichocarpa	XP_002313564.1	histone deacetylase [Populus trichocarpa]	8.0e-23	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O22446

Fln msg: Distance to subject end: 377 aas, your sequence is shorter than subject: 61 - 501

Fln protein: RRDLGCHSIRAFHTDDYIHFLSSVAPDTQQEQLRQLKRFNVGEDCPVFDGLFNFCQSSAGG

Protein Length: 62

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCGTGCCTTTCATACTGATGATTACATACATTTCTTGAGTAGTGTAGCACCAGACACTCAGCAGGAGCAGCTGAGGCAGTTGAAGAGGTTCAATGTGGGGGAGGACTGCCCTGTGTTTGATGGGCTTTTCAATTTTTGCCAGTCTTCTGCAGGAGGC

Fln Alignment:

GG46A6U01CUVLB___FHTDDYIHFLSSVAPDTQQEQLRQLKRFNVGEDCPVFDGLFNFCQSSAGG
O22446_______________FHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQTYAGG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain