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UniGene Name: sp_v3.0_unigene69451
Length: 212 nt
 UniGene Fasta
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| >sp_v3.0_unigene69451
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Ace file of the UniGene sp_v3.0_unigene69451
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g57430, chloroplastic; Flags: Precursor gb|AEE79654.1| pentatricopeptide repeat-containing protein [Ara | - | - | 1.0e-15 | 63% |
| FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 72% |
| Sma3 | Pentatricopeptide repeat protein | - | - | 0.0 | - |
| Source | Gene names |
|---|---|
| Sma3 | At2g22070; At3g46790; At3g57430; CRR2; GSVIVT00002188001; GSVIVT00004068001; GSVIVT00006467001; GSVIVT00008457001; GSVIVT00010543001; GSVIVT00017181001; GSVIVT00017247001; GSVIVT00019419001; GSVIVT00020655001; GSVIVT00022577001; GSVIVT00022590001; GSVIVT0 |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
| Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
| Sma3 | nuclease activity | GO:0004518 | Molecular Function | 0.0 | - |
| Sma3 | binding | GO:0005488 | Molecular Function | 0.0 | - |
| Sma3 | methyltransferase activity | GO:0008168 | Molecular Function | 0.0 | - |
| Sma3 | nucleotide-excision repair | GO:0006289 | Biological Process | 0.0 | - |
| Sma3 | metabolic process | GO:0008152 | Biological Process | 0.0 | - |
| Sma3 | chloroplast RNA processing | GO:0031425 | Biological Process | 0.0 | - |
| Sma3 | polycistronic mRNA processing | GO:0031426 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Peptidase S8/S53, subtilisin/kexin/sedolisin | IPR000209 | - | 0.0 | - |
| Sma3 | Legume lectin domain | IPR001220 | - | 0.0 | - |
| Sma3 | UVR domain | IPR001943 | - | 0.0 | - |
| Sma3 | Pentatricopeptide repeat | IPR002885 | - | 0.0 | - |
| Sma3 | Hemimethylated DNA-binding domain | IPR011722 | - | 0.0 | - |
| Sma3 | Tetratricopeptide-like helical | IPR011990 | - | 0.0 | - |
| Sma3 | Methyltransferase type 11 | IPR013216 | - | 0.0 | - |
| Sma3 | Asp/Glu racemase, active site | IPR018187 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT3G57430.1 | OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein chr3:21255731-21258403 REVERSE LENGTH=890 | 3.0e-20 | 63% |
| RefSeq | Arabidopsis thaliana | NP_191302.2 | pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 4.0e-20 | 63% |
| RefSeq | Populus trichocarpa | XP_002299387.1 | predicted protein [Populus trichocarpa] | 2.0e-20 | 72% |
| Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: D5ADG9
Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 70 - 312
Fln protein:
V
Protein Length:
71
Fln nts:
C
Fln Alignment:
GG46A6U01C3KQY___NITEEENEFIPCNHSEKLAIAFGIINTRSGTSIRITKNLRVCNSCHSAAKFISKI
D5ADG9_______________DVEEEIKENMLFAHSEKLAIAFGLISTRSGTSIRITKNLRVCGDCHSATKFISKI
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
