SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69370

Length: 169 nt

UniGene Fasta

>sp_v3.0_unigene69370
CGTCGTGACCTTGGCTGTCACTCAAGGGGAACGCCATTTGCTCGCCAGACGATTTGGAGAGGATCCACACCAAACCATACCCTGATTGTATAGCTCAAGGGGTGGCGACAGTCATGGCATCCTACTCTCAATGGAATGGGGAGCCGTTACATGCGAGCCGCCATTTGCT

Ace file of the UniGene sp_v3.0_unigene69370

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative beta-D-glucan exohydrolase [Oryza sativa Japonica Group] dbj\|BAG97693.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	2.0e-16	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%

Source	Gene names
Sma3	B1122D01.6; GSVIVT00024156001; Os05g0449600; OsI_20160; OsJ_18743; VITISV_033665;

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	0.0	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	0.0	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47000.1	Glycosyl hydrolase family protein chr3:17313811-17316539 REVERSE LENGTH=608	3.0e-14	62%
RefSeq	Arabidopsis thaliana	NP_190284.1	beta-glucosidase [Arabidopsis thaliana]	3.0e-14	62%
RefSeq	Populus trichocarpa	XP_002313393.1	predicted protein [Populus trichocarpa]	8.0e-14	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUD1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 338 aas, your sequence is shorter than subject: 55 - 631

Fln protein: S*PWLSLKGNAICSPDDLERIHTKPYPDCIAQGVATVMASYSQWNGEPLHASRHL

Protein Length: 56

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGGGAACGCCATTTGCTCGCCAGACGATTTGGAGAGGATCCACACCAAACCATACCCTGATTGTATAGCTCAAGGGGTGGCGACAGTCATGGCATCCTACTCTCAATGGAATGGGGAGCCGTTACATGCGAGCCGCCATTTGCT

Fln Alignment:

GG46A6U01BXIYA___KGNAICSPDDLERIHTKPYPDCIAQGVATVMASYSQWNGEPLHASRHL
A9NUD1_______________ENNTVIDYKGLVNIHMTPYFDAIAKGVSTIMVSYSSWNGMKMHANRFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain