SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69356

Length: 144 nt

UniGene Fasta

>sp_v3.0_unigene69356
CGTCGTGACCTTGGCTGTCACTCAGAAGAAACGCAAAAGCATAATGGAGTTTGATGCAGAGGAGTTCGATAGAATAATGAGTGTCAATGTTAAAGGAGTGAGGCTTGGAATGAAACATGCAGCACGAGTCATGGTTCCCAGAAG

Ace file of the UniGene sp_v3.0_unigene69356

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	7.0e-10	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%

Source	Gene names
Sma3	At3g51680; GSVIVT00023991001; GSVIVT00037431001; POPTRDRAFT_560966; POPTRDRAFT_577103; POPTRDRAFT_913693; RCOM_0156780; T18N14.60;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein chr3:19173622-19174667 REVERSE LENGTH=303	5.0e-13	67%
RefSeq	Arabidopsis thaliana	NP_190736.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	7.0e-13	67%
RefSeq	Populus trichocarpa	XP_002323034.1	predicted protein [Populus trichocarpa]	7.0e-15	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQ34

Fln msg: Distance to subject end: 140 aas, your sequence is shorter than subject: 47 - 294

Fln protein: VVTLAVTQKKRKSIMEFDAEEFDRIMSVNVKGVRLGMKHAARVMVPR

Protein Length: 48

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAAGAAACGCAAAAGCATAATGGAGTTTGATGCAGAGGAGTTCGATAGAATAATGAGTGTCAATGTTAAAGGAGTGAGGCTTGGAATGAAACATGCAGCACGAGTCATGGTTCCCAGAAG

Fln Alignment:

GG46A6U01AUD57___KSIMEFDAEEFDRIMSVNVKGVRLGMKHAARVMVPR
A9NQ34_______________KSVAEYDMEQFDRVMSVNVRGVMLGIKHAARVMIPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain