SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69321

Length: 171 nt

UniGene Fasta

>sp_v3.0_unigene69321
CGTCGTGACCTTGGCTGTCACTCAGTTTCTGTATACCACATTAAAGCTTAATAACATTATTCTGCGATATTCTCGAATGGCAGCTGTGGTCCTTGTCAGCCTCCCACCACCACCTCCGCAGCATCCATCCTATTTCTTTATGGAGTATGTGGATTTGCTTGTTGATGGAAT

Ace file of the UniGene sp_v3.0_unigene69321

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cation chloride cotransporter n=2 Tax=Papilionoideae RepID=A4VCJ8_MEDTR	-	-	2.0e-12	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Cation chloride cotransporter	-	-	3.449e-09	-

Source	Gene names
Sma3	At1g30450; F26G16.3; GSVIVT00028401001; OSJNBa0078D03.20; Os01g0304100; Os01g19850; Os08g0323700; OsI_01563; OsI_28779; OsJ_01456; OsJ_26882; P0475H04.13; PHYPADRAFT_112971; PHYPADRAFT_175763; PHYPADRAFT_204831; PHYPADRAFT_217277; POPTRDRAFT_642216; POPTR

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sodium:potassium:chloride symporter activity	GO:0008511	Molecular Function	-
Sma3	cation:chloride symporter activity	GO:0015377	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	sodium ion transport	GO:0006814	Biological Process	-
Sma3	chloride transport	GO:0006821	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Interleukin-6/G-CSF/MGF	IPR003573	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Na/K/Cl co-transporter superfamily	IPR004842	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G30450.1	CCC1, ATCCC1, HAP5 cation-chloride co-transporter 1 chr1:10762905-10769061 FORWARD LENGTH=975	3.0e-15	76%
RefSeq	Arabidopsis thaliana	NP_849732.1	cation-chloride co-transporter 1 [Arabidopsis thaliana]	4.0e-15	76%
RefSeq	Populus trichocarpa	XP_002317348.1	cation-chloride cotransporter [Populus trichocarpa]	9.0e-17	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9L5

Fln msg: Distance to subject end: 18 aas, your sequence is shorter than subject: 56 - 458

Fln protein: VVTLAVTQFLYTTLKLNNIILRYSRMAAVVLVSLPPPPPQHPSYFFMEYVDLLVDG

Protein Length: 57

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTCTGTATACCACATTAAAGCTTAATAACATTATTCTGCGATATTCTCGAATGGCAGCTGTGGTCCTTGTCAGCCTCCCACCACCACCTCCGCAGCATCCATCCTATTTCTTTATGGAGTATGTGGATTTGCTTGTTGATGGAAT

Fln Alignment:

GG46A6U01AGUD0___VTQFLYTTLKLNNIILRYSRMAAVVLVSLXXXXXQHPSYFFMEYVDLLVD
D5A9L5_______________VNKFLYTTLKLNATILRYSRMAAVVLVSLPPPPPNHPPYFYMEYMDLLVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain