SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene69244

Length: 143 nt

UniGene Fasta

>sp_v3.0_unigene69244
CGTCGTGACCTTGGCTGTCACTCATGGTTCGAGGAGATATTGTTTTTACCAGTAAACTAAGTGATGAAGAGGCAACATGGCTTCTTGAAACTACACAGTCATTTTATTTGAATGACTCAAGGTACAAGCTAGTTGAGCAATTC

Ace file of the UniGene sp_v3.0_unigene69244

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP synthase mitochondrial F1 complex assembly factor 1 [Arabidopsis thaliana] gb\|AAK96532.1\| At2g34050/T14G11.17 [Arabidopsis thaliana] gb\|AAB67623.2\| expressed protein [Arabidopsis thaliana] gb\|AAN64532.1\| At2g34050/T14G11.17 [Arabidopsis thaliana] gb\|A	-	-	2.0e-11	73%
FL-Next	tr=Chaperone atp11p, putative; Ricinus communis (Castor bean).	-	-	0.0	75%

Source	Gene names
Sma3	At2g34050; GSVIVT00003010001; POPTRDRAFT_859008; RCOM_1012880;

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	0.0	-
Sma3	protein complex assembly	GO:0006461	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATP11	IPR010591	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G34050.1	" INVOLVED IN: protein complex assembly; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATP11 (InterPro:IPR010591); Has 304 Blast hits to 304 proteins in 167 spec	6.0e-17	73%
RefSeq	Arabidopsis thaliana	NP_565778.1	ATP synthase mitochondrial F1 complex assembly factor 1 [Arabidopsis thaliana]	8.0e-17	73%
RefSeq	Populus trichocarpa	XP_002305764.1	predicted protein [Populus trichocarpa]	4.0e-17	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9S955

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 31 aas, your sequence is shorter than subject: 47 - 165

Fln protein: S*PWLSLMVRGDIVFTSKLSDEEATWLLETTQSFYLNDSRYKLVEQF

Protein Length: 48

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTTCGAGGAGATATTGTTTTTACCAGTAAACTAAGTGATGAAGAGGCAACATGGCTTCTTGAAACTACACAGTCATTTTATTTGAATGACTCAAGGTACAAGCTAGTTGAGCAATTC

Fln Alignment:

GG46A6U01EWRLN___LMVRGDIVFTSKLSDEEATWLLETTQSFYLNDSRYKLVEQF
B9S955_______________VLIRGDVVFTSKLTDEEAKWLLEASQSFYLNDARYKLVERF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain